MmuEX6029767 @ mm9
Exon Skipping
Gene
ENSMUSG00000047369 | Dnahc14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:183674864-183677410:+
Coord C1 exon
chr1:183674864-183674972
Coord A exon
chr1:183675993-183676118
Coord C2 exon
chr1:183677316-183677410
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGAGCCGTTTGATTTGTTAGGAG
3' ss Score
1.99
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAATCGCTTCTACATGGGACTTTCCAAGATTCTGGAAGCAACTGTACTGGTCACAGACATGCAGGAAGAACTTTTGGTTATTGGTCCTCAAATAGAACAAAAAGCAAAG
Seq A exon
GAGAAGGAGATCCTGATGGAAAAGCTGCGGAAAGATTCGCAAATAGTCGAAAAGGTTCAGATGCTTGTGAAGCAGGATGAGGAGATCGTGGCTGAACAAGTGAAGATTGTGGAAGAGTACGCCCAG
Seq C2 exon
AAAACTTCCAATGAACTAAAAAATGTGCTGCCTTCTTTAGACAAGGCAATTGTGGCCCTAAATGCCCTGGATAAAAGTGATATTTCTGAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'46-48,'46-47,47-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(10.4=94.6)
A:
PF127772=MT=FE(12.2=100)
C2:
PF127772=MT=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCTACATGGGACTTTCCA
R:
TCAGAAATATCACTTTTATCCAGGGC
Band lengths:
194-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: