HsaEX6037002 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225324737-225346654:+
Coord C1 exon
chr1:225324737-225324832
Coord A exon
chr1:225331437-225331577
Coord C2 exon
chr1:225346456-225346654
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATGAATTAATTATCTTTCAGGTT
3' ss Score
8.86
5' ss Seq
AAGGCATGA
5' ss Score
1.35
Exon sequences
Seq C1 exon
GTTGTGGGCCCTAAACAAATCCAAGTAGCTGAAGCTCAAAACGTCCTTAAAATTGCGCGACAAAGACTTGCTGAGAAACAAAGAGGTTTACAGCTG
Seq A exon
GTTGAAGAACATTTGCTGTTTTTACAGGCAGCTTACAAAGATACCGTTGCTGAAAAACAACTATTAGCAAATCGGAAAACAATGGCCAGCAGGCGCTTTCAGTGTGCGTCAGTCTTACTAACTGTCCTGGAAGATGAGAAG
Seq C2 exon
GTGGTTTCTTCAGCTCTATTTAATGAAGATAAACTTTGCTTCTCTTTTCGGCTTTGCACTGTAATCATGCAAAACAATGCTAATGGAAATCTAATACAGGATGACATTGGATTCCTACCAGAAGAAGAATGGAACATCTTTTTATATTCTGGCATATTGATAAATATTAAAAGTGCATTATCCCAGTCTAGACTTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-66/72=65-C2
Average complexity
C3
Mappability confidence:
98%=99=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.9=100),PF127812=AAA_9=PU(1.2=3.1)
A:
PF127772=MT=FE(15.8=100),PF127812=AAA_9=PU(2.6=12.5)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTTAAAATTGCGCGACA
R:
AGTCTAGACTGGGATAATGCACT
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains