MmuEX6029762 @ mm9
Exon Skipping
Gene
ENSMUSG00000047369 | Dnahc14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:183682647-183687538:+
Coord C1 exon
chr1:183682647-183682742
Coord A exon
chr1:183685374-183685514
Coord C2 exon
chr1:183687323-183687538
Length
141 bp
Sequences
Splice sites
3' ss Seq
ACTGGTGGACTGTCTTTCAGATT
3' ss Score
8.21
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGGTGCGTCCTAAGCAGGCACAAGTGGCAGAGGCTCAGAACGTCCTTCAGATTGCAAAGCAGAGGTTGTTGGAAAAGCAAAGAGGTTTACAACTG
Seq A exon
ATTGAAGATCATCTGCAGTTCCTGCACACGTCCTACAGAGACATTGTTACTGAAAAGCATCAACTGGCGTCTCGGAAAAAGCTGGCCACCAAGCGCCTCCAGTGCGCATCCGTCCTGCTGACCGTCCTGGAGGACGAGAAG
Seq C2 exon
ATCCGATGGCAAGAAACGATCAACGAGATAGACTGCAAGCTGAAAGGCGTCTGTGGTGACACATTCCTTTCATCCGCATGCCTCGCCTACATCGGAGTCTTAACGCCAGAGTTCCGAGAGCTGGTGATTCAGAAATGGAAAGACTTCTGCACTCGGGCAGAAATCATCTTGTCACCCAATTTTTCCTTAATTGACGTGATGGCAGAAAAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'52-53,'52-52,53-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.2=100)
A:
PF127772=MT=FE(13.7=100)
C2:
PF127772=MT=PD(14.6=68.1),PF127812=AAA_9=PU(4.7=8.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGGCAGAGGCTCAGAAC
R:
GATGATTTCTGCCCGAGTGCA
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: