MmuEX0014972 @ mm9
Exon Skipping
Gene
ENSMUSG00000047369 | Dnahc14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:183693377-183699805:+
Coord C1 exon
chr1:183693377-183693607
Coord A exon
chr1:183693981-183694102
Coord C2 exon
chr1:183699546-183699805
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTGTATTGGATTTTTTTCAGAAT
3' ss Score
7.88
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATTCGCCGGTGGCATAATCAAGGGCTGCCTCTTGGGCAGCATTTGGCAGAAAATGCCATTTTGATGAAAAGGACAAAGCAGTGGCCACTGGTGATCGACCCGCACAAGCAAGCACTCCACTGGATCCGCCAGATGGAAGGGCCCAGGCTGCAAGAGATTTCTGCTCAAGATAGCAATTACACCAAAAAACTGGTGATTGCCATGCAAGCAGGAGACCCTGTCCTCCTGCAG
Seq A exon
AATGTCCCTGAAACATTCCCTCCCAATTTGAGGGCAATGCTAAAGAAGGATGTTTGCCAGAAAAGAGGGCAATATTACATCAAAATCGATGATACTGAGATTGAATTCAATAAAAATTTCAG
Seq C2 exon
GAAGTGTGTTAGATGATGAAGAGATTGTAGAAACCCTGAGAAAATGCAAAATGACTTCAAATGAGATTTCCAAACGTATCAAAGAAACGGAAAAGGCGGAAAGCAAAATTCAAGCAACGCGCAAGAACTACCTCCCTATCGCCACTAGGGGCGCCCTGCTTTACTTCGTGGTGGCCGGCCTCTCGCATGTGGAGAAGATGTACCAGTTCTCCCTGGAGTGGCTCCGGGGGGTTTTTGTTTCCTTTACAGTTTCCAAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'56-56,'56-55,57-56
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(58.9=100)
A:
PF127812=AAA_9=FE(31.0=100)
C2:
PF127812=AAA_9=PD(3.1=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCAAGCACTCCACTGGAT
R:
GTAGTTCTTGCGCGTTGCTTG
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: