HsaEX6037000 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225524968-225528403:+
Coord C1 exon
chr1:225524968-225525198
Coord A exon
chr1:225525763-225525884
Coord C2 exon
chr1:225528159-225528403
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTGTCTATTGGGTTTTTCAGAAT
3' ss Score
8.13
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
ATCAGCCGATGGCATAATCAGGGACTGCCTCATGGTCAGTATTCAGTAGAGAATGCCATCTTGATCAAGAATGGCCAGCAGTGGCCACTGCTGATTGACCCACATAGGCAAGCTCACAAATGGATCCGTCAGATGGAAGGATCCAGGCTGCAGAAGCTCTCCATTGAAGACAGCAATTATACCAAAAAAATTGAAAATGCTATGAAGACAGGAGGGAGTGTCCTCCTGCAG
Seq A exon
AATCTCCTTGAGACATTAGCTCCAGGCTTAAAGGCAATTCTGAAAAAGGATATCTATCAGAAAAAAGGACACTATTTCATAAGGGTTGGTGATGCTGAGTTCGAATACAATTCAAATTTTAG
Seq C2 exon
GTTATACTTATCTACAGAAATAGACAACCCCCATTTTCTTCCATCAGTTTATAACTTTGTTACTATGATCAACTTCACTGTAACATTCCAAGGTTTGCAAGATCAACTCTTGTCTACTGTGGTAACTCATGAAGTTCCTCATTTAGAAGATCAACGTTCCAAGTTACTGGAGAGTATTTCCCTTGATGCCATAACTCTTGAAGAACTAGAGGAAAAAACATTAAATTTACTGCAGAAAGCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'94-101,'94-99,95-101=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(3.7=14.1),PF127812=AAA_9=FE(33.5=100)
A:
PF127812=AAA_9=FE(17.4=100)
C2:
PF127812=AAA_9=FE(35.2=100)
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTGCCTCATGGTCAGTA
R:
TGGAAGAAAATGGGGGTTGTCT
Band lengths:
254-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)