HsaEX6037006 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225495987-225510525:+
Coord C1 exon
chr1:225495987-225496112
Coord A exon
chr1:225506285-225506379
Coord C2 exon
chr1:225510366-225510525
Length
95 bp
Sequences
Splice sites
3' ss Seq
GACCTATATTTTTATTGCAGAAA
3' ss Score
8.17
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GAAACAGAAACTCTAATGGAAAAACTACGGAAAGATTCACAAGTAGTTGAGAAAGTTCAGATGCTTGTTAAACAGGATGAAGAAATTGTGGCAGAAGAAGTAAGAATTGTGGAAGATTATGCTCAG
Seq A exon
AAAACTGCCAATGAACTAAAAAGTGTGCTGCCAGCCTTTGACAAGGCAATTGTGGCTCTGAATGCCCTGGATAAAGCTGATGTCGCTGAATTAAG
Seq C2 exon
AGTATACACACGGCCTCCCTTCCTTGTACTGACTGTCATGAATGCAGTGTGTATTCTTCTGCAAAAGAAACCTAACTGGGCAACGGCAAAGTTACTTCTTTCAGAAACTGGTTTCCTGAAAAAATTGATTAACCTTGACAAGGACAGCATACCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'87-93,'87-92,88-93=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(14.1=100)
A:
PF127772=MT=FE(10.4=100)
C2:
PF127772=MT=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGAGAAAGTTCAGATGCTTGT
R:
AACTTTGCCGTTGCCCAGTTA
Band lengths:
175-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)