RnoEX0001845 @ rn6
Exon Skipping
Gene
ENSRNOG00000048741 | AABR07021946.1
Description
NA
Coordinates
chr13:100049447-100053908:+
Coord C1 exon
chr13:100049447-100049572
Coord A exon
chr13:100050819-100050913
Coord C2 exon
chr13:100053749-100053908
Length
95 bp
Sequences
Splice sites
3' ss Seq
GGACTGTGCCTTCATTGCAGAAA
3' ss Score
7.87
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAAAAAGAGATCTTGATGGAAAAGCTGCGGAAAGACTCTCAAATCGTGGAAAAGGTGCAGGTGCTTGTGAAGCAGGATGAGGAGATTGTGGCTGAACAAGTGAAAATTGTGGAAGACTATGCTCAG
Seq A exon
AAAACTGCCAACGAGCTGAAAAGCGTGCTGCCTTCTTTAGACAAGGCAATCGTGGCCCTCAACGCCCTGGATAAAAGCGATATTTCCGAATTGAG
Seq C2 exon
GGTCTACACACGCCCTCCCTACCTTGTTCTGACCGTCATGAACGCCGTGTGCATCCTTCTAGAGAAGAAGCCCAACTGGACAACAGCAAAGCTGCTGCTCTCGGACACCAGCTTCCTAAAGCGACTAATTAACCTGGACAAGGACAGCATCCCCGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048741-'25-28,'25-26,26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.2=100)
A:
PF127772=MT=FE(9.2=100)
C2:
PF127772=MT=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGATGAGGAGATTGTGGC
R:
TAGGAAGCTGGTGTCCGAGAG
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]