HsaEX0020157 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225097118-225123614:+
Coord C1 exon
chr1:225097118-225097239
Coord A exon
chr1:225117684-225117788
Coord C2 exon
chr1:225123527-225123614
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTGATTCTGGACAGGAT
3' ss Score
8.73
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GATCTTGTGAATGAATGGGATCAAAACTTGACTCTCTTCTCTTACACCCTTGAGGAATGGATGAATTGTCAAAGAAATTGGCTTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAG
Seq A exon
GATTACCTTGAAGTTAAAAGATTAATTTTCCCAAGATTTTACTTTCTTAGCAATGCCGAGCTTCTTGATATTCTAGCTGATAGCAGAAATCCTGAGTCTGTACAG
Seq C2 exon
ATTTTTAAGTCAAGGGATTGAAGACTGGAACTGCCAGATGTTTTCCCAATGGGTGTTATCTCATCCAGGACAAGTGGTACTTACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-21/72=19-24
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.8=100)
A:
PF083938=DHC_N2=PU(42.0=97.1)
C2:
PF083938=DHC_N2=PD(20.0=33.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTGTGAATGAATGGGATCAA
R:
CACAGTAAGTACCACTTGTCCTGG
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development