MmuEX0014966 @ mm9
Exon Skipping
Gene
ENSMUSG00000047369 | Dnahc14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:183567887-183571618:+
Coord C1 exon
chr1:183567887-183568058
Coord A exon
chr1:183571306-183571410
Coord C2 exon
chr1:183571500-183571618
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTGGCTTTGGACAGGAA
3' ss Score
7.52
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
ACAGCTTGCAGCGGAAGCCAAACTCTTCTCCCAGGTGCTCGTCATGTGGAAAGAAATAATGTCTCGGGTACTGAACAAGCTCAACGCCCTACATATAACCATCAGCACGGGGATTCTCGGCGTTCTGAAGAGTTGCAACAGCCATCTTGAAAGCATAAAGAAGAGTCTTGAG
Seq A exon
GAATACCTTGAACTTAAAAGAATGAGTTTCCCGCGATTTTTCTTCCTCAGCAACGATGAACTTCTTGATATTCTAGCTAACAGCAAAAATCCCGAATCCGTGCAG
Seq C2 exon
CCTCATCTTGTGAAATGTTTTGAAAACATCAGACGCATTCTACTGTGGAAACAGGACGTCGGCCCTCCCTCAGTGAAGATGCTCATCTCTGCCGAAGGGGAAGGCCTGGTGATGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'18-22,'18-21,19-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAACTCTTCTCCCAGGT
R:
CCTTCGGCAGAGATGAGCATC
Band lengths:
255-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: