HsaINT0049482 @ hg38
Intron Retention
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225304908-225307569:+
Coord C1 exon
chr1:225304908-225305089
Coord A exon
chr1:225305090-225307460
Coord C2 exon
chr1:225307461-225307569
Length
2371 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
AATACTTTTTCTTCCTTCAGGGA
3' ss Score
10.56
Exon sequences
Seq C1 exon
AACTTGAAAGAAAAACTTGCCCCAACATGTGTCCAAATCCACAAAAGCATGAAAGACTTGAACAGAAAATACTTTGAAGAAACTGGAAGATTTTATTATACCACTCCCAATAGCTACTTGCAATTTATGGAAACATTTGCACACATTTTGAGGGCACGAGAGGAAGAGATGCAAACAAAGAG
Seq A exon
GTAAGACTTTGAGAACAAATCATAAATATATTTTATATTGGTGTTTTTGTTTGCGAAAAGAGACACAAATGCAAAATGGTGAGCCAAATCTGCCTTTTTGGTGGGACAAAAAGCCAGAAGCTGCAGAAGATCTTAAAAGAGATAAGGTTGACATTCCCCCTGTGTGCCTTCAAAGGCCGCCCCTGTCAAGGCAAGGCTGACAGACTTGGCCAGTAAATAAACAATTAGTCCCTGTTGGATTCCGACAGTTTATTTCTTACATGGGCAATGAAAGCAAGAGTAACGAAGAGTGCCACTCCCCATGTCCTTTGTCTCATGGGATGACACCAAAATAAAAGGCTTCAGATGACTACAACGCAGATAGTGGAACACCTACTAAGCAGTTTTATAGCCAGCAGTGGTACCTGAGGAGGCACGGGAAGAAACATGAAGCAGAAGGCCTCACCCCTAATCAGAATACAGGAGACATTGAGAAACTATCTTATGACAATCTTCCAGGAAGATGGGGAAATGAGTGGGAAATGGCCTGGTAGCATCTACTCACAAGTGCCCCACATTTTCATGTTCTAGAAAGATCAGGGGTGTCCTGCCAACACTTAGATCAGCTGCAGCCAAGCCTTGTCTATATAACCTATATGGAGACATGAAGGGCTGCCGAGGCACCATGGTGGAACTATTCTTCTCCAAGTCCATCTCCTAAACCTGTCACGTATCCAGCTAATAATTGTTTTTTAAAAATAGCCCACTCCATCAGATACTGTAACTAATTACACTGACTGGGGCCTGGGCCAGATCCATTCCATTTGCCATAGGGAACACTGCATGAGAGTGATCATGACTATGACTCCCACTTGGAGGATAGACCACAGCCAAGCTCCGTGTCTGGAGCCAAGCCAGTTAAAAATGTTATTAATCCAAGTGCATCAAGAGGTATTGGCCATTGCACCTTCTCTGTCTCAACTGGCCAGCAGGAAGTCCAGGGCAATGTGATATTTCATCAGCACTCATGCTGGAGAGTGTGAACTAATTTGTGTGCTGCAGGCAAGTATAGGCCTGACATTTACATAAGCAGCAACCTCAATAGCAGCATTTTGCTAATGTGGGGTCAGGGTCTAATTTTATTAAGTTTTCGTTAACAAGGTCAGGTGGGGCATGATAGATCCAATAACAGTTCATTTTAGAGCAGTTGAGGTAGTCTGTGAATATAATAATGAGGCTAAAGAGAATCATATCAGTGCTCAGAAAGCTAATCTTGTTCTGTTTCAAGGAGAGGCTGTTCACTCCTGGGGTCAGCAGATCCTAGGAGGTTTCTGAGAGTCCTTAGATTGAGATTTTTGTTGGTCAGCAGTTAAATTAAGGATGATGTCAACAGTCTGAGAAAATTGGCCAGATGCCCTACAGGCAAGCGTCAAGAGAGTTTAATGAATCTTCCTCTCACTCCTAACCTCCTGGGATCTAAGGTGTCCCCTCCCCATCATCCAGGGTTGTTGCTCTCCATTCACAGCCATGTAATCAGTATGACCAGTCCCTATCACAGTCATTCACCCCTTTTCCATTCCTCCTCATGTCTTACCCACAACACAGCTCTAGATCACTCAGTAGTTTCTTCCTTACATACCTTGTACTATCCTAGAACATCTCCCACCCCCTAATGCGTGGGCCATGCCAGGACAATCTTAAGAGCTATCACCTTATATGCATAATCATTATTATCAACATCCATAACTGCTTATATCCAGCAAGCATATCTCGGTGGCAAAAGACAGGTTACAGTCCACCACTGCCCGGCTCTTCTTTGCTACTTGGAAATTTCAGTAGTCCAGTTTCCCAGGGGTAGATATGGGGGGAGAAAAAGCAAGAAGGGTTAATTATATGGTTTGGGTCTCTTACAGCCTATCTGGTTCTCTTTCCCACCCCGAAACTTATAATTAAATATTCTGTTTAAATGAGAGGTACCCTTATGGGGAATTAGTACATTTAAAGCCCAATTTGCCTGTCTTAAGTGTGCTCCAGTGGGAGCTGAACCTCAGATGCCCAGTTCTCATTATTAGTTTTTCCTTTGAGTCCATTTTATTTTAACAGCATCTGTTCTTCAAGTTGAGAAATTTCCCCTCTATTCCTAGTTATCATGAATTTTATCAAATGTTTTTTCTGCATCAATGGATACTGATGCAGCAGTGAATTTTCTTCTTTATACCTTGTTAATATAGTGGATTATATTGATTGACTTTCAAATAGTGAGCCAGTCTTGCATCTCTAGAATAAAATCCATTTGGCCATAATTTGGTGTAATTCTTTTTATATATTATCAAATTATATTTGCTAAATTGTGTTATATCTTACACCTTCTTAATACTTTTTCTTCCTTCAG
Seq C2 exon
GGATCGCTTCCATATGGGTCTATCCACAATCCTGGAAGCAACCACTCTAGTTACAGAAATGCAAGAAGAGCTCTTGATTCTTGGCCCTCAAGTAGAACAAAAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842:ENST00000327794:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=82.0)
A:
NA
C2:
PF127772=MT=PU(11.8=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development