MmuINT1008782 @ mm10
Intron Retention
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181741036-181744841:+
Coord C1 exon
chr1:181741036-181741333
Coord A exon
chr1:181741334-181744732
Coord C2 exon
chr1:181744733-181744841
Length
3399 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCTCTTTGCTTCCCCTTCAGGAA
3' ss Score
11.4
Exon sequences
Seq C1 exon
AGTGATTGTGGTGCCTGTCTACAACTCTGCATCTCAGAATTGCTGGCGTATTTCAAGTAACTTCATTCTCCTCTATTTATGTTCTCTTGTGATTCTTAAACATTGTTGTTCTTCAGGATAAAATAAGAGAGTTTGCCCCAACGTGTGTCGAAATCCACAAAAGTATGAAAGATTTGAGCGCAAAATACTTTGAAGAAACTGGAAAGCACTATTACATCACTCCCAGTTGCTACTTTAAGTTCTTGGAGACATTTACCCACAGTCTGAGGATAAGACAAGAAGAGATGCAGACAAAGAG
Seq A exon
GTAAGGCTTTGACTAAAACAGAAATGTGTGTTTTTACATCAGTGCTTCTGTGTCTATAAAATGCCATCTATAAAAGATAGACACAAATACAAAATAATGAATTCAAATCTACCTTTCCTGTGGGAGCCTCGGGGCCAGCAACTACAGCGGATCATAAGGAGACAGTCCGCACCTCCCCTGCATGCATCTGGAGGCCACCCCACCATGGAGAGACTGAGGGATCTAACATGGAAAAATCAGTTCTTGTTAGATTGTTTCTCACCGATGTAGACAGTGGAAGCAAGGCGATGGCTGGAGGTGCCATTCCCTGTGGCTTTGGGGCTAATACCAAAAAACAAGTGGCCAGATGCCTGCAGCACAGATGGCCAAGAACATGTGCCATACTGCCTCAAAGAGCATTATGGGTCACAGCTCTGGCTGAGAATATATAGAAGAAAAACATACACACACACACAACACACACACACAAAGCAGGAAGCCTCAGGCGTGATTAGATCCATCTTCGTCGTTGCTGATGGTGCTGTTGTGGTTCTTGTTGTTGGACTATCTCTGACTTGTTCTTTGATAGTCTTACACATCTCCAATGTATCTTGACCATGCCCATCCCAGCACTCCACCTCCCTCGCCTCCAGCCTCTCTCCTTGCGTCTTCCCACAGACTCTCACGTCCCTCCCTAGCCTCTTTTCTTCTTTTTTTTCTTGCTCTGAGTCCAGATAGCCCTGTTTGCTGGGATGTTGAGTGGATCTTGTTGACGCAGGCTCACCCGGGTGAAAATAGCTGCAGTGGAACCCGAGCACCATGCTATGTCCTGTCCAGAAGACAGCCTTTCATGGTTCTTCTCCCAGCCTCCAGCTCTCACATGCTTTCCTCTGCCTTTGTAACTTTTTTTATGGTGCCAAGGACTCAGGTGTGCTAGACAAGCAGTCTGCCACTCACTTCCTCCCACTGCCCCGAATACATAACCAGAACCCAGGAGACAACGAGAATCTGTCTCGTGACAGCCCCCTGGAGAGAAAGTAAATGGATAGGAATCAGCCTTGGAATACTTCTCACAAATATCCAGAATTCTCACATGCCAGAACAACAGAGCTCCAGCTGAGAGTCAGAACCAGGGCAGATGAGTCACACCTAGATGGGCTTCAGGCCCCACAGGACAGTTACCCTACTAAGAGCCCATAGCCCATTGCAGGCCTGTTGTGCATCCAGCAAACAAGTCATTAAAATAAAAAAAGCCCCTTTGTCAGGCACCTTTGGACAGACTCCATTCAGGCTGTCTTATAATATGTTGAATGAGAGTAGCTGTAGTGAGGACTCCCACTGAGAAGCTAAACCACAGTCAGACGCTCTGTACAGAGCAGAGCTCCATCACTCAGCTGGTGTGTCTAGACATCCTGGCAGTTATACAACTCTGCCCCAGCTGGGCAGCAGGAATTATGAGTAGTCTTGTATGATGAATACATCCCAGCCTGGCATTTACCTGATAATTTAGTGTAGCCTTGATCACCCTCTCCTAACCTGGGGTCAGTGTCAGATTTCATTGACTTTTGTCTGCGACATCAGGTGGGCTGAAAGACTGCCAGTTCAGTGCAGAGCGGTTGGGATAGTTGGAACACAGGCTAAAGAAGCCACAGTAAGTTCAGAAGTGAATCTTGCCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGATGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGATGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTATCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTATCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGATGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGTGTGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGATGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTTCAGGATGTTTCCTCTTGCTCCAGTGGAGTTGTCTACTTTCCAGGATGTTTCCTCTTGCTCCAGGGGAGGTGTCTACCTTCCAGGATGTTTCCTCTTGCTCCAGGGGAGGTGTCTACCTTCCAGGATGTTTCCTCTTGCTCCAGTGGAGGTATCTACCTTCCAGGATGTTTCCTCTTGCTCCAGTGGAGGTGTCTACCTTCCAGGGTGTTTCCATGAGGTTAAGATTTCTACTGTTCAAAATGTAAATGGAGGAGTAGGTAAATTGCTCAACTTCCCTTCAGAGCAGAGTCGATAGATCCTTTCGCTCCTCCTCCATCTAGTGGTGCCTCCTTTCCCTCGGAAAGATTGTTGCTATCCACTCGTGGCTGGGTACCGCTGTCATTAGACTTTATGCCCAAAGCGAGTCCATCTTCTTAGTCTATCCTGTCCCTGAACAAGTTGAGGTAATTCCTCCTGGCTCCTAGTTCTCTGTCAGGAATTTTCTCAAGTGCTTTTTTACATTTTTAGGTGATAGGAACATCTGATTTTCCTACTTTAGACTCCTAATGTGTGGTGGGTTATGTATCAGTTGACTTTCAAATCCTGCGTTTGTCTTATATCCCTAAAATATAAATGCTGCTTGGCCATGATGTGCAATTCTCTATATGGTATTAAACTGCATTTCCTAATATTCGGTTATATTCTTCATACAGAGTGAGCACCCCTAGTCTGACATCTAGTACTTGGAACGCTGCCATAGAGAGCTCTGAGAGTTTGAGAGTTTAGAGATTTCAGATTAGGGATTTGCTAAGCCAGGGTACCCTACATCTAAAACACTTGTGGAGTCAAGCATTGCAGCTATGGGAAAGGTCAGCCTTCTCTTTGCTTCCCCTTCAG
Seq C2 exon
GAATCGCTTCTACATGGGACTTTCCAAGATTCTGGAAGCAACTGTACTGGTCACAGACATGCAGGAAGAACTTTTGGTTATTGGTCCTCAAATAGAACAAAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369:ENSMUST00000160345:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.4=80.3)
A:
NA
C2:
PF127772=MT=PU(10.4=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types