MmuEX1008671 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181626641-181634447:+
Coord C1 exon
chr1:181626641-181626982
Coord A exon
chr1:181632326-181632571
Coord C2 exon
chr1:181634326-181634447
Length
246 bp
Sequences
Splice sites
3' ss Seq
AAGTAATCTCTTCACTTCAGCTG
3' ss Score
4.19
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
ACTTTAGACTCGTTGCTGCACCAACTGGACACTGAGCCCGTGGAACTGGAAGAATTTGTGGAGCATTTGAATTTTTTGGATGACATTTTCTCGAGCTTGACTGAAATAGAAAAGGATTTCTGCACAATTTCTGAGCTGTATTCCATTGTGAGGCATTACCAGATCAATGTGTCAGAAGAGCAGATCGCCATCTACAAAATCATCTTCATGAAGTTCAATCATCTAAAAACATCCATGAAGTTTGTCGCCATGAATAGAGAAACCAGTCTCACTAAATTCAAGAACGGTTTGGAAGCATATATTGTCAGCCTACGAGTGGATGTCAGTAACTTAAAAGATAAG
Seq A exon
CTGTTTCCATATGAACGGAAAATAAATGAAATATCAATCTCGGCAACTAACGAAGCTGCTCTTGAAAAAATGCTGTTTAAGATCATCGATCTCTGGAACACGACTCCCTTGCACCTGGTCCCTCATCTCACAGAGGGCCGTTCCATCCTCATCATCTCCTCCACTGACGACTTGATAACCCAGCTGGAAGACTCCCAGGCCATCCTTGCATCAATCAAAGGATCGTCCTACCTCAGGCCAATTAAG
Seq C2 exon
CAACTTGTGATTAAATGGAATCAAAACTTAACCCTCTTCTCTCAGACCATTGACGAATGGGTGACCTGTCAAAGAACTTGGCTTTCTCTTGAACCAATCTTTCAGTCTTTAGAAATACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369_MULTIEX2-3/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=FE(19.6=100)
C2:
PF083938=DHC_N2=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCACAATTTCTGAGCTGT
R:
TGACAGGTCACCCATTCGTCA
Band lengths:
295-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types