HsaEX6037025 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225270251-225284941:+
Coord C1 exon
chr1:225270251-225270441
Coord A exon
chr1:225273246-225273491
Coord C2 exon
chr1:225284820-225284941
Length
246 bp
Sequences
Splice sites
3' ss Seq
GAATACTTTGTTCATTTTAGATG
3' ss Score
7.77
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTTACCTAAAAGCGATATGGTAACACATCTTAAGCAAGTGGTAACAGAGTTTAAACAAGAGCTGCCTATCATTATAGCTCTGGGAAATCCCTGTCTCAAGCCAAGGCATTGGGAGGCTCTCCAGGAGATTATTGGGAAGTCAGTTCCGCTTGATAAAAACTGTAAAGTAGAGAATCTTCTAGCTCTCAAG
Seq A exon
ATGTTTCAGTATGAAAATGAAATAAATGATATGTCAACCTCAGCAACTAATGAAGCTGCTCTTGAAAAAATGCTATTTAAGATTATTGATTTTTGGAACACTACTCCTTTGCCTTTAATTCTTCACCACACAGAGATTTACTCTATCTTCATAATTCCATCTATAGATGACATATCAGCTCAGTTAGAAGAGTCTCAAGTCATACTTGCAACAATTAAAGGATCTCCCCACATTGGGCCCATTAAG
Seq C2 exon
GATCTTGTGAATGAATGGGATCAAAACTTGACTCTCTTCTCTTACACCCTTGAGGAATGGATGAATTGTCAAAGAAATTGGCTTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'35-41,'35-38,36-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.3=100)
A:
PF083938=DHC_N2=FE(19.6=100)
C2:
PF083938=DHC_N2=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAACACATCTTAAGCAAGTGGT
R:
CGTATTTCTGAAGAATGAAAGACTGG
Band lengths:
292-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)