HsaEX0020136 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225185291-225206179:+
Coord C1 exon
chr1:225185291-225185425
Coord A exon
chr1:225192696-225192911
Coord C2 exon
chr1:225205971-225206179
Length
216 bp
Sequences
Splice sites
3' ss Seq
CTACACTGGATTTTTCCCAGATT
3' ss Score
5.33
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTTTGTGTTGGTGTGATGTTAGTGGGCCCAACAGGTGGAGGAAAGACAACAGTCAGAAGAATTTTGGAAAAAGCATTAACGCTATTACCAATTGCAGACTTCTTATCAGTTGCAGAAAGAAAATCTGCTTCAAAG
Seq A exon
ATTTCAGAAAGAAAAGGAAAAGTAGATATTTGTGTTTTAAATCCAAAGTGTGTCACTCTCAGTGAACTATATGGACAACTGGATCCTAATACTATGGAATGGACTGATGGATTATTATCAGCAACAATTCGAAGTTATGTATATTTTAACACACCAAAGAACACAAAGAAAGACATTGATCTCAGACTAAAGTCAAGAATCTCAGATTTATCCAAT
Seq C2 exon
ATTTTGATTGGCAGTGGATTATCCTAGATGGCCCAGTGGACACCTTTTGGGTAGAAAATCTGAACTCTGTGCTAGATGATACTAGAACATTGTGCCTAGCAAACAGTGAGAGAATAGCTTTAACTAATAAAATAAGAGTGATTTTTGAAGTGGACAATCTCTCTCAGGCCAGTCCTGCTACTGTCAGCCGATGTGCCATGGTCTATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-36/72=35-38
Average complexity
C3*
Mappability confidence:
96%=97=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTAGTGGGCCCAACAGG
R:
TGGCCTGAGAGAGATTGTCCA
Band lengths:
292-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development