MmuEX1008655 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181676955-181685850:+
Coord C1 exon
chr1:181676955-181677089
Coord A exon
chr1:181680719-181680931
Coord C2 exon
chr1:181685757-181685850
Length
213 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTTCCCTGTCCCCAGTCT
3' ss Score
10.01
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTTTGTGTTGGCGTGATTCTAGTGGGCCCAACAGGAGGAGGAAAGACGACAGTCCGGAAAATTTTAGAGAAAGCATTGGTAACACTTCCGGTTACTTCTGCCATGCTTATGAAAGAAAGGCAATCTGACTCAAAG
Seq A exon
TCTACAGGGAAAAAAGGAAAAGTCGATGTTTGTGTTTTGAATCCAAAATGTATCACTCTCAGTGAACTGTATGGACAGCTGAACATTAACACCATGGAATGGAACGATGGGTTACTATCGGCAGCAATTCGAAATTATGTCCATATGAACACTGCAGATTACTCTAAGATAGACAATGATTTTGAAATGTCAGGAATCACAGACTTATCTAAT
Seq C2 exon
ATTTTCCAAGTTGGTTTCTCTACGATAGCGGATATGGATAACAACATTTTTATGGGTGAACTAGAGAAAAGTTTTAAAACTCCAGAAATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'44-47,'44-46,46-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTGTTGGCGTGATTCTAGTG
R:
TTTAAAACTTTTCTCTAGTTCACCCA
Band lengths:
213-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types