HsaEX0020136 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225372993-225393881:+
Coord C1 exon
chr1:225372993-225373127
Coord A exon
chr1:225380398-225380613
Coord C2 exon
chr1:225393673-225393881
Length
216 bp
Sequences
Splice sites
3' ss Seq
CTACACTGGATTTTTCCCAGATT
3' ss Score
5.33
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTTTGTGTTGGTGTGATGTTAGTGGGCCCAACAGGTGGAGGAAAGACAACAGTCAGAAGAATTTTGGAAAAAGCATTAACGCTATTACCAATTGCAGACTTCTTATCAGTTGCAGAAAGAAAATCTGCTTCAAAG
Seq A exon
ATTTCAGAAAGAAAAGGAAAAGTAGATATTTGTGTTTTAAATCCAAAGTGTGTCACTCTCAGTGAACTATATGGACAACTGGATCCTAATACTATGGAATGGACTGATGGATTATTATCAGCAACAATTCGAAGTTATGTATATTTTAACACACCAAAGAACACAAAGAAAGACATTGATCTCAGACTAAAGTCAAGAATCTCAGATTTATCCAAT
Seq C2 exon
ATTTTGATTGGCAGTGGATTATCCTAGATGGCCCAGTGGACACCTTTTGGGTAGAAAATCTGAACTCTGTGCTAGATGATACTAGAACATTGTGCCTAGCAAACAGTGAGAGAATAGCTTTAACTAATAAAATAAGAGTGATTTTTGAAGTGGACAATCTCTCTCAGGCCAGTCCTGCTACTGTCAGCCGATGTGCCATGGTCTATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX1-1/5=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTAGTGGGCCCAACAGG
R:
TGGCCTGAGAGAGATTGTCCA
Band lengths:
292-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)