HsaEX6037010 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225289885-225305089:+
Coord C1 exon
chr1:225289885-225290082
Coord A exon
chr1:225300869-225301030
Coord C2 exon
chr1:225304908-225305089
Length
162 bp
Sequences
Splice sites
3' ss Seq
AAATATGTGTTTTGCCTAAGGAC
3' ss Score
4.84
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATTGGAATAGATGGATGTGGGAAAAAAACATGTGCAACCTTGGCCTGTTATTTGACAGATAATAAACTATACCGAGTGCCTATATCTCACAAATGTGCCTACATCGAATTCAAAGAAGTCTTTAAAAAGGTGTTTATTCACGCAGGATTAAAAGGGAAACCCACTGTTCTGATGGTTCCCAATTTAAACATAGAACAA
Seq A exon
GACTCATTTTTAGAAGATTTGAACTACATCATCAGTTCAGGAAGAATACCTGACCTGTTTGAAAATGTTGAGCTGGATTCTATTGCAATGAAAATCAGATATCTTACTGAACAATCTGGTCATATGGATAATAGGCAATCTTTACTTTCATTCTTTCAAAAG
Seq C2 exon
AACTTGAAAGAAAAACTTGCCCCAACATGTGTCCAAATCCACAAAAGCATGAAAGACTTGAACAGAAAATACTTTGAAGAAACTGGAAGATTTTATTATACCACTCCCAATAGCTACTTGCAATTTATGGAAACATTTGCACACATTTTGAGGGCACGAGAGGAAGAGATGCAAACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-56/72=55-59
Average complexity
C2
Mappability confidence:
98%=98=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(24.7=100)
A:
PF127802=AAA_8=FE(20.2=100)
C2:
PF127802=AAA_8=PD(18.7=82.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGTTTATTCACGCAGGA
R:
ATCTCTTCCTCTCGTGCCCTC
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains