BtaEX6068026 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29029625-29032461:+
Coord C1 exon
chr16:29029625-29029660
Coord A exon
chr16:29029715-29029876
Coord C2 exon
chr16:29032270-29032461
Length
162 bp
Sequences
Splice sites
3' ss Seq
AAATGTATGTTTTGCCTAAGGAG
3' ss Score
2.45
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GAAACACTATTGCTTTCTCGATTAGCTTTGTCCAGA
Seq A exon
GAGTTATTTATGGAAGATTTGAACAGCATTATTAATTTGGGGAAAATACCTGACCTGTTTGAAAATGAAGAGCTGGATGCGATTGCCCTCAAGCTTAGAGCTCTTGCCGAACAGTCTGGTTATGTCGATAATAGGCAAGCTTTACTTTTGTTCTTCCAAAAG
Seq C2 exon
AGAATACATAAAAATCTTAATATTCTTATGACCATGAGCCCTACAAGACCTAACTTTCACCAAAACTGTAGACTATATCCTTCCCTGATCAGCTCCTGCACAGTTGATTGGTATGAGAAGTGGCCGGAAGAAGCTCTGCTGATTGTAGCTGACACTTTCTTAAGAGAAAAAGTGGATATCAAGAACAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449-'5-5,'5-4,6-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(5.6=83.3)
A:
PF127802=AAA_8=FE(29.6=100)
C2:
PF127802=AAA_8=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACTATTGCTTTCTCGATTAGCT
R:
CTCTCTGTTCTTGATATCCACTTTTT
Band lengths:
226-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]