MmuEX7000631 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181734773-181739109:+
Coord C1 exon
chr1:181734773-181734970
Coord A exon
chr1:181736114-181736275
Coord C2 exon
chr1:181738921-181739109
Length
162 bp
Sequences
Splice sites
3' ss Seq
TAATGTATGTTTCCCTGAAGGTG
3' ss Score
7.14
5' ss Seq
AGGGTACTG
5' ss Score
4.5
Exon sequences
Seq C1 exon
CTGGGAATTGACGGCTGCGGGAAGGAAACATATGCAACCATAGCCTGCTACTTGGCAGAATACAAAGTATGCAAAGTGCCTATCTCTCACAACTACGCCATCTCAGAGTTCAAAGAAATGTTTAAAAAGGTGTTTATTCAAACAGGCTTGGAAGAGACCCCCACGGTTGTCATGGTGACCAACTTACAAGAAGAGCAC
Seq A exon
GTGTCATTTCTGGAAGATTTGAACTACATTATCAATGCAGGAAAGATTTCTAACATGTTTGAAAATGAGGAGCTGGATTCGATCGTTATGAGAGTCGGAACATTTGCCGAGCAGTTGACTTGCATAGAAGATAGAAAATATTTACTCTCATTATTCCAAAGG
Seq C2 exon
AGAGTATCTAAAAATCTGCATATCTGTATGATAAGTGCTACGGGACCTAACTTCCGCCATAACTGTCGCGTTTACCCCTCCATGATCAGTTCCTGCACCATCGACTGGTTCCAGCGGTGGCCCGATGAGGCCCTCCTTGTTGTGGCCAGTTCCTATCTAAAAGAAAAGCTGAAAGTAGAGGACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'61-76,'61-68,67-76=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(24.3=100)
A:
PF127802=AAA_8=FE(19.9=100)
C2:
PF127802=AAA_8=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATAGCCTGCTACTTGGCA
R:
GATCATGGAGGGGTAAACGCG
Band lengths:
249-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types