HsaEX0020155 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225300869-225305089:+
Coord C1 exon
chr1:225300869-225301030
Coord A exon
chr1:225303156-225303347
Coord C2 exon
chr1:225304908-225305089
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCATTAATTTTCAGAGA
3' ss Score
8.44
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GACTCATTTTTAGAAGATTTGAACTACATCATCAGTTCAGGAAGAATACCTGACCTGTTTGAAAATGTTGAGCTGGATTCTATTGCAATGAAAATCAGATATCTTACTGAACAATCTGGTCATATGGATAATAGGCAATCTTTACTTTCATTCTTTCAAAAG
Seq A exon
AGAATATATAAAAATCTTCATATTTTTGTGATCATGAGTCCTGAAGGACCTAGCTTCCGCCAAAATTGTAGAGTGTATCCTTCTATGATTAGCTCCTGCACGATCGATTGGTATGAGAGGTGGCCAGAAGAAGCTCTCCTTATTGTAGCTAACTCATTCTTAAAAGAAAAGGTCAATTTTGAGAACAGAGAG
Seq C2 exon
AACTTGAAAGAAAAACTTGCCCCAACATGTGTCCAAATCCACAAAAGCATGAAAGACTTGAACAGAAAATACTTTGAAGAAACTGGAAGATTTTATTATACCACTCCCAATAGCTACTTGCAATTTATGGAAACATTTGCACACATTTTGAGGGCACGAGAGGAAGAGATGCAAACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'105-140,'105-138,106-140
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.2=100)
A:
PF127802=AAA_8=FE(24.0=100)
C2:
PF127802=AAA_8=PD(18.7=82.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGAGCTGGATTCTATTGCA
R:
TCTCGTGCCCTCAAAATGTGT
Band lengths:
258-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development