HsaEX0020155 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225488571-225492791:+
Coord C1 exon
chr1:225488571-225488732
Coord A exon
chr1:225490858-225491049
Coord C2 exon
chr1:225492610-225492791
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCATTAATTTTCAGAGA
3' ss Score
8.44
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GACTCATTTTTAGAAGATTTGAACTACATCATCAGTTCAGGAAGAATACCTGACCTGTTTGAAAATGTTGAGCTGGATTCTATTGCAATGAAAATCAGATATCTTACTGAACAATCTGGTCATATGGATAATAGGCAATCTTTACTTTCATTCTTTCAAAAG
Seq A exon
AGAATATATAAAAATCTTCATATTTTTGTGATCATGAGTCCTGAAGGACCTAGCTTCCGCCAAAATTGTAGAGTGTATCCTTCTATGATTAGCTCCTGCACGATCGATTGGTATGAGAGGTGGCCAGAAGAAGCTCTCCTTATTGTAGCTAACTCATTCTTAAAAGAAAAGGTCAATTTTGAGAACAGAGAG
Seq C2 exon
AACTTGAAAGAAAAACTTGCCCCAACATGTGTCCAAATCCACAAAAGCATGAAAGACTTGAACAGAAAATACTTTGAAGAAACTGGAAGATTTTATTATACCACTCCCAATAGCTACTTGCAATTTATGGAAACATTTGCACACATTTTGAGGGCACGAGAGGAAGAGATGCAAACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX5-2/2=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.2=100)
A:
PF127802=AAA_8=FE(24.0=100)
C2:
PF127802=AAA_8=PD(18.7=82.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGAGCTGGATTCTATTGCA
R:
TCTCGTGCCCTCAAAATGTGT
Band lengths:
258-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)