BtaEX6068025 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29029715-29034488:+
Coord C1 exon
chr16:29029715-29029876
Coord A exon
chr16:29032270-29032461
Coord C2 exon
chr16:29034307-29034488
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATATTTTTATTAATTTTCAGAGA
3' ss Score
8.64
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GAGTTATTTATGGAAGATTTGAACAGCATTATTAATTTGGGGAAAATACCTGACCTGTTTGAAAATGAAGAGCTGGATGCGATTGCCCTCAAGCTTAGAGCTCTTGCCGAACAGTCTGGTTATGTCGATAATAGGCAAGCTTTACTTTTGTTCTTCCAAAAG
Seq A exon
AGAATACATAAAAATCTTAATATTCTTATGACCATGAGCCCTACAAGACCTAACTTTCACCAAAACTGTAGACTATATCCTTCCCTGATCAGCTCCTGCACAGTTGATTGGTATGAGAAGTGGCCGGAAGAAGCTCTGCTGATTGTAGCTGACACTTTCTTAAGAGAAAAAGTGGATATCAAGAACAGAGAG
Seq C2 exon
AACTTAAAAGAAAGACTAGTTCCAACATGTGTCCAAATCCACAGAAGCATAAAAGAGTTGAACATAAAATACTTTCAAACAACTAGAAGGCGTTATTATATCACTCCCAATAACTACTTGCGATTCATGGATACATTTGTCCACATTTTGAAGTCCCGAGAGAAGAAAATGCAAAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449-'6-6,'6-5,7-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(29.6=100)
A:
PF127802=AAA_8=FE(35.2=100)
C2:
PF127802=AAA_8=PD(27.4=80.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGATTGCCCTCAAGCTTAG
R:
TCGGGACTTCAAAATGTGGACA
Band lengths:
244-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]