HsaEX0020147 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225007413-225038823:+
Coord C1 exon
chr1:225007413-225007544
Coord A exon
chr1:225023615-225023865
Coord C2 exon
chr1:225038694-225038823
Length
251 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTTTTAAATTGTAGGTT
3' ss Score
8.74
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTGGATAGTTCTCGAACATATTCTCTAGATGAATTTTGTGAAGAGCAGTTACAGCAAGCTACCCAGGCATTGAAACAACTTGAGGACATCAGGAATAAAGCAATTTCAGAGATGAAAAGTACTTTTCTAAAG
Seq A exon
GTTGCAGAAAAGAATGAAATCAAAGAGTATTTTGAGTCAAAACTCTCTGAAGATGACACAACACATTTCAAGCTGCCTAAATATAGACGTTTATTAGAAACATTTTTCAAGTTTGTAATGCTGGTTGACTACATATTTCAGGAACTCATTCGTCAACTTATGAACACTGCAGTCACACTACTTTTGGAATTATTTAATGGTTCTGCTGGAATGCCATTTTCAGTGGAAAAAAAGAATGAAAATCTTATCAG
Seq C2 exon
AACATTCAAGGACAACTCTTTTCCTACTGGAAAGACAACAAATGATTGTGAAGAACTTGTTGATAATTCAAAGTTACATGCTATTTCTGTTCAAAAGTCAGAAGTAAAAACAGACACTGATATTAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-6/72=5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATAGTTCTCGAACATATTCTCT
R:
TCAGTGTCTGTTTTTACTTCTGACT
Band lengths:
252-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development