HsaEX0020147 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225195115-225226525:+
Coord C1 exon
chr1:225195115-225195246
Coord A exon
chr1:225211317-225211567
Coord C2 exon
chr1:225226396-225226525
Length
251 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTTTTAAATTGTAGGTT
3' ss Score
8.74
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTGGATAGTTCTCGAACATATTCTCTAGATGAATTTTGTGAAGAGCAGTTACAGCAAGCTACCCAGGCATTGAAACAACTTGAGGACATCAGGAATAAAGCAATTTCAGAGATGAAAAGTACTTTTCTAAAG
Seq A exon
GTTGCAGAAAAGAATGAAATCAAAGAGTATTTTGAGTCAAAACTCTCTGAAGATGACACAACACATTTCAAGCTGCCTAAATATAGACGTTTATTAGAAACATTTTTCAAGTTTGTAATGCTGGTTGACTACATATTTCAGGAACTCATTCGTCAACTTATGAACACTGCAGTCACACTACTTTTGGAATTATTTAATGGTTCTGCTGGAATGCCATTTTCAGTGGAAAAAAAGAATGAAAATCTTATCAG
Seq C2 exon
AACATTCAAGGACAACTCTTTTCCTACTGGAAAGACAACAAATGATTGTGAAGAACTTGTTGATAATTCAAAGTTACATGCTATTTCTGTTCAAAAGTCAGAAGTAAAAACAGACACTGATATTAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-5/14=4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATAGTTCTCGAACATATTCTCT
R:
TCAGTGTCTGTTTTTACTTCTGACT
Band lengths:
252-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)