MmuEX7000655 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181604803-181615497:+
Coord C1 exon
chr1:181604803-181604934
Coord A exon
chr1:181605681-181605931
Coord C2 exon
chr1:181615383-181615497
Length
251 bp
Sequences
Splice sites
3' ss Seq
AACTGCCTTGTGAATTATAGGTT
3' ss Score
6.88
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGACACTTCCCGAACACACGTTCTGGAAAAGTTTTGTGAAGAGCAGTTACAGCAAGCCACCCAGGCGGTGGCACAACTCGAGGAGATCAGGAGTAAAGCAATTGTAGAGATAAAGAAGTCAGCCTTAAAG
Seq A exon
GTTGCAGAAAAGAAAAATGTTAAGGAATACTTTGAGTCAAAACCGTCTGAAATCAACACAACACATTTTAAGCTGCCCCAGTATCGAAATCTATTAGAAACCAATCTGAGGTTTTTAAAGCTGATTGACTACCTGTTTCAAGAACTCATTCGCCAGCTCATGAACTCTGCCCTCACCCAACTTCTGGATCTCTTCACTGGTTCTGCTAGGATGCCATTTTCAAAGGAAAAAAAGAATGAAAGTCTCATGAG
Seq C2 exon
AGACAGGAAGATCTTTTCTAGGAAGGAATCAGACGATGATGAATTTGTTCTTTCAAGTTTAACTGCTCCTTCTTTTCAAAGCTCACAACCAAAACTAGACACCGATGTTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'4-11,'4-10,13-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACACTTCCCGAACACAC
R:
TTTAACATCGGTGTCTAGTTTTGGT
Band lengths:
244-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types