HsaEX0020127 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225350521-225373127:+
Coord C1 exon
chr1:225350521-225350625
Coord A exon
chr1:225355641-225355730
Coord C2 exon
chr1:225372993-225373127
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTATTTCCTTTTAGAAA
3' ss Score
8.94
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTCGTTCTCTGTTGGCATATAGAAATGCTACTGATTGGCCAGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGCCAAATGGATCACTTGAG
Seq A exon
AAAGTAATATATACTGCAACTCAGCAATTGGGTTTACAAAACTGGTCATCTCAGAAAGAGAAGATTATACAGTTTTATAATCAACTTCAG
Seq C2 exon
GTTTGTGTTGGTGTGATGTTAGTGGGCCCAACAGGTGGAGGAAAGACAACAGTCAGAAGAATTTTGGAAAAAGCATTAACGCTATTACCAATTGCAGACTTCTTATCAGTTGCAGAAAGAAAATCTGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'57-65,'57-62,58-65
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACACCTGTAATCCCAGC
R:
TCTGCAACTGATAAGAAGTCTGCA
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)