MmuEX1008676 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181666344-181677089:+
Coord C1 exon
chr1:181666344-181666515
Coord A exon
chr1:181674370-181674459
Coord C2 exon
chr1:181676955-181677089
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATATATTCATATCTTTTCAGAAA
3' ss Score
7.67
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGGTAGGGGCGAGCACCTCTCTGAGTTAGACGAGTCCCTCATCCTCATCGAGGCCATCCGAGAAGCCAGTTTGTCCAAGCTCCTTCCGGAAGATGTCCTACCTTTTGAAAAGATCATAGAAGATGTTTTTCCTAGAATAACGGTTTCAAAAATAAATCACCTTACCTTGGAG
Seq A exon
AAAGCAATATCTACTGCAACAGAACAATTAGGCTTTCAACATTGGCCATCTCAGAAAGAAAAGATCATACAGTTTTATCAGCAGCTTCAG
Seq C2 exon
GTTTGTGTTGGCGTGATTCTAGTGGGCCCAACAGGAGGAGGAAAGACGACAGTCCGGAAAATTTTAGAGAAAGCATTGGTAACACTTCCGGTTACTTCTGCCATGCTTATGAAAGAAAGGCAATCTGACTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369_MULTIEX4-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTCCCTCATCCTCATCG
R:
GTTGGGCCCACTAGAATCACG
Band lengths:
175-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types