HsaEX0020131 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225440003-225446955:+
Coord C1 exon
chr1:225440003-225440119
Coord A exon
chr1:225445662-225445820
Coord C2 exon
chr1:225446823-225446955
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAAATGTTAACTTAGGAA
3' ss Score
5.09
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GCATCAACCTACCAACTGGTGAATGTTCCATCTTTGGATATTTTGTGGATATAGAGCAATGTGAATTCATACCTTGGTCAGATTTAGTTCCTAATGATCAGACACTAATTCAAAGAG
Seq A exon
GAACTTCATTACTAACTAATCTTCAAAGATCTGGCGGAAACTTCTTGAAGATAACAGAATGTGGAGAATGCATTAATTATACCGCTACCAGAGACACAACATGCCTTTCTTTTCTCATGAGCCTTCTTTTAAAGAATTCCTGCCCTGTACTTCTCACAG
Seq C2 exon
GAGAATCTGGTGTTGGGAAAACTGCTGCCATTAATCAAATGCTTGAAAAGCTAGAGGGTCCAGGAGCATTTGACATAAAACATGGTTCAATTTTAGGAGACACCCTATTATATAGTGAAATAAAAAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(50.8=55.6)
C2:
PF127752=AAA_7=PD(47.5=62.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTGGTGAATGTTCCATCT
R:
AGGGTGTCTCCTAAAATTGAACCA
Band lengths:
212-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)