MmuEX0014970 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181698049-181704602:+
Coord C1 exon
chr1:181698049-181698171
Coord A exon
chr1:181702324-181702482
Coord C2 exon
chr1:181704470-181704602
Length
159 bp
Sequences
Splice sites
3' ss Seq
CAACTGTCCTCTGACCTTAGAGA
3' ss Score
7.04
5' ss Seq
CGGGTATGA
5' ss Score
7.63
Exon sequences
Seq C1 exon
ACACTGGCATCAGCTTACCTGGTAGCGAGCGGTCTGTATTTGGGTATTTTGTGGACGTACAGCAATGCGAGTTTATGCCTTGGTCAGATTTAGTTCCTACTGCTCACACCCTAATTCAAAAAG
Seq A exon
AGACGTCGCTGCTGACTGACTTCCAGGGATCTAGTGAGAACGTGCTGAGGATGAACGAGTATGGGGAGTGCGTGAACTACATGGCTACGAGAGACACCATCTGCCTCTCTTTCCTCATGAGCCTTTTCCTCAGGAACTCCTACCCTGTACTTCTCACGG
Seq C2 exon
GCGACTGTGGTGTTGGGAAGAGTGTGGCCATCAACAAGATGCTTGAGAAGCTCGAAGGCCGAGGAACACTCAATATCAAATATGGGTCAATTTTAGGAAAAGTCCTGTTACATAATGATATTAAAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(51.7=57.4)
C2:
PF127752=AAA_7=PD(46.7=62.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGCATCAGCTTACCTGG
R:
GGACTTTTCCTAAAATTGACCCAT
Band lengths:
227-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types