HsaEX0020132 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225458437-225460827:+
Coord C1 exon
chr1:225458437-225458568
Coord A exon
chr1:225459608-225459775
Coord C2 exon
chr1:225460657-225460827
Length
168 bp
Sequences
Splice sites
3' ss Seq
TATAACATTTCTTTTTAAAGGCT
3' ss Score
7.63
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
AATATTCAAGATCTGTCTATAGTTGCAGCTTGTGTTCCAGTTGTGAATGATATCAGCCCACGTCTTCTCAAACACTTTTCCATGCTGGTATTACCTCATCCTTCACAAGACATCTTATGTACTATTTTCCAG
Seq A exon
GCTCATTTGGGAATTTATTTCTCCATCAATAACTTCACACCTGAAGTTCAGAAAAGTAAGGATCAGATAATATCTTGTTCCCTAGCTATATACCATCAAGTACGTCAGAATATGTTACCAACTCCAACAAAATGTCACTACATGTTTAATCTTCGAGATATGTTTAAG
Seq C2 exon
CTTCTCCTAGGATTGCTGCAAGCTGACAGGACTGTTGTTAACTCCAAAGAGATGGCTGCTCTGCTCTTTGTTCATGAAGCCACCCGAGTATTTCACGATCGCTTAATTGATTTCACTGATAAAAGCCTTTTCTATCGGTTGCTTTCAAGGGAACTTGAGAACTGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(15.3=86.4)
A:
PF127752=AAA_7=FE(23.9=100)
C2:
PF127752=AAA_7=PD(10.9=43.9),PF127802=AAA_8=PU(10.0=45.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATGATATCAGCCCACGT
R:
AGTTCCCTTGAAAGCAACCGA
Band lengths:
246-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)