MmuEX1008664 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181716183-181720268:+
Coord C1 exon
chr1:181716183-181716320
Coord A exon
chr1:181718768-181718935
Coord C2 exon
chr1:181720098-181720268
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATGAAACTCTCTCTTTAAAGGCT
3' ss Score
7.59
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
AGTATTCAGGATCTCTCTCTAATCGCTGCTTATACCTCTTCTGTCAGTGGGAAGGAGATCAGCCCCCGTCTCCTCAAACACTTCTCCACGCTGGTGTTGCCTCATCCTCCACAGAGTGCCCTATGTACGGTATTTCAG
Seq A exon
GCTCACTTGGGAATGTATTTCTCCATCAATAACTTCGTGAATGAGGTTCAGAAATGCAGAGATGAGATTGTGCACTGCTCCCTGGCAATATATTATGAAGTCTGTAAGAAACTGTTGCCAACGCCAACCAAATGCCACTATATATTTAATCCCAGAGACATATTTAAG
Seq C2 exon
CTTCTGCTAGGATTGATGCAGGCAGATAAGAACATAATTAACTCCAAAGAGATGGCAGCTCTGCTCCTAGTTCACGAAGCCAGCCGCGTGTTTCATGATCGTTTGACTGATCAAAGCGAGAAAAGCCTTTTCTACCAGATTCTGTCAACAGAACTCCAGAATCATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(19.7=100)
A:
PF127752=AAA_7=FE(22.4=100)
C2:
PF127752=AAA_7=PD(10.2=43.9)
Main Inclusion Isoform:
ENSMUST00000208001fB8901
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGGAAGGAGATCAGCC
R:
TGACAGAATCTGGTAGAAAAGGCT
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types