HsaEX0020152 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225460657-225477784:+
Coord C1 exon
chr1:225460657-225460827
Coord A exon
chr1:225463616-225463783
Coord C2 exon
chr1:225477587-225477784
Length
168 bp
Sequences
Splice sites
3' ss Seq
AAATTCTTATCTTACAATAGATT
3' ss Score
4.9
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
CTTCTCCTAGGATTGCTGCAAGCTGACAGGACTGTTGTTAACTCCAAAGAGATGGCTGCTCTGCTCTTTGTTCATGAAGCCACCCGAGTATTTCACGATCGCTTAATTGATTTCACTGATAAAAGCCTTTTCTATCGGTTGCTTTCAAGGGAACTTGAGAACTGTTTTCAG
Seq A exon
ATTCAGTGGACCCAAGAAAACCTGATGAATCACTCAACTGTATTTTTGGACTTCTTGGATATAAACAAGACTCATAGAAAAAAGATTTATCAGAATACCAGTGACTATAATAAACTTGCCAGTGTACTTGATGAATTCCAAATGAAGTTGGGTTCAATTTCTTTGGAG
Seq C2 exon
ATTGGAATAGATGGATGTGGGAAAAAAACATGTGCAACCTTGGCCTGTTATTTGACAGATAATAAACTATACCGAGTGCCTATATCTCACAAATGTGCCTACATCGAATTCAAAGAAGTCTTTAAAAAGGTGTTTATTCACGCAGGATTAAAAGGGAAACCCACTGTTCTGATGGTTCCCAATTTAAACATAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX3-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(10.9=43.9),PF127802=AAA_8=PU(10.0=45.6)
A:
PF127752=AAA_7=PD(8.5=33.3),PF127802=AAA_8=PU(0.4=1.8)
C2:
PF127802=AAA_8=FE(24.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCACCCGAGTATTTCACG
R:
GGGTTTCCCTTTTAATCCTGCG
Band lengths:
257-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)