MmuEX7000633 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181720098-181726501:+
Coord C1 exon
chr1:181720098-181720268
Coord A exon
chr1:181725386-181725553
Coord C2 exon
chr1:181726409-181726501
Length
168 bp
Sequences
Splice sites
3' ss Seq
GAATTCTTGTTTCACAATAGATT
3' ss Score
6.25
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
CTTCTGCTAGGATTGATGCAGGCAGATAAGAACATAATTAACTCCAAAGAGATGGCAGCTCTGCTCCTAGTTCACGAAGCCAGCCGCGTGTTTCATGATCGTTTGACTGATCAAAGCGAGAAAAGCCTTTTCTACCAGATTCTGTCAACAGAACTCCAGAATCATCTACAG
Seq A exon
ATTTACTGGAGTCACGAGAGACTGATGAACAAGCCAGTCCTATTTGTGGACTTCATGGATATAAACAAGCCTCACCGGAAAAGGGTCTACCAGAACACCGATAACTACAATGAACTTTTGAGCATCCTTACCAAATTCCAACAGAAGTTGAGTTCATCATCTCTGGAG
Seq C2 exon
ATGTCTCATTCAGTTGTATTCTTCAAGGAAGCTATAGATCATATTACAAGAACTACCAGAGCCCTTCGACAGTCAGGGAGTCACATGTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'63-74,'63-64,64-74=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(10.2=43.9)
A:
PF127752=AAA_7=PD(3.1=12.5),PF127802=AAA_8=PU(0.7=3.6)
C2:
PF127802=AAA_8=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAGGATTGATGCAGGCAG
R:
TGACTCCCTGACTGTCGAAGG
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types