HsaEX0020173 @ hg19
Exon Skipping
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76472654-76475714:-
Coord C1 exon
chr17:76475567-76475714
Coord A exon
chr17:76475107-76475198
Coord C2 exon
chr17:76472654-76472815
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACGTCCTTTTCCTCTAACAGCTT
3' ss Score
9.69
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CGCCATTTCTGCGTGTTTGCTGTGAGCTTCCCCGGCCAGGAGGCCCTCACCACCATCTACAACACAATCCTGACGCAGCACCTGGCCTTCCGCTCGGTCTCCATGGCTATCCAGAGGATAAGCAGCCAGCTGGTGGCCGCGGCCCTGG
Seq A exon
CTTTGCATCAGAAAATCACGGCAACATTTCTTCCCACGGCCATTAAGTTTCATTATGTCTTCAACCTCAGGGACCTCTCCAATATTTTCCAG
Seq C2 exon
GGACTCTTATTTTCCACAGCAGAAGTTCTGAAAACCCCACTGGACCTCGTCCGCCTTTGGCTACATGAGACTGAACGAGTGTATGGTGACAAAATGGTTGACGAAAAAGACCAGGAAACATTGCATAGAGTCACCATGGCCTCCACCAAGAAGTTCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-'54-56,'54-55,55-56
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.0=100)
A:
PF127752=AAA_7=FE(11.0=100)
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGCTGTGAGCTTCCCC
R:
AGGTCCAGTGGGGTTTTCAGA
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)