MmuEX6091629 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118067511-118069529:-
Coord C1 exon
chr11:118069382-118069529
Coord A exon
chr11:118068915-118069006
Coord C2 exon
chr11:118067511-118067672
Length
92 bp
Sequences
Splice sites
3' ss Seq
ATGCCTCTCTCCTGTAACAGCCT
3' ss Score
7.99
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CGCCACTTCTGCGTGTTTGCTGTGAGCTTCCCCGGCCAGGAGGCCCTCACCTCCATCTACAACACGATCCTGGCACAACACTTGTCGTTTCGTTCAGCCCCTCTGGTGATCCAGCGGCTGAGCAGCCACCTGGTGACTGCAGCCCTGG
Seq A exon
CCTTGCACCAGAAAGTCTCAGCGACGTTCCTTCCCACAGCCATTAAGTTTCATTACATCTTCAACCTCAGGGACCTCTCCAATATATTCCAG
Seq C2 exon
GGCATCTTATTCTCCACAGCAGAGATTCTGAAAACCCCGCTGGACCTCGTCCGCCTTTGGCTGCATGAGGCTGAGCGAGTGTATGGGGACAAGATGGTTGATGAGAAAGACCAGGAGACGCTGCACAGGGTCACCATAGCATCTGTCAAGAAATTCTTTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'66-69,'66-68,67-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.0=100)
A:
PF127752=AAA_7=FE(11.0=100)
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACAACACTTGTCGTTTCG
R:
TCTTGTCCCCATACACTCGCT
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types