HsaEX0020823 @ hg38
Exon Skipping
Gene
ENSG00000175497 | DPP10
Description
dipeptidyl peptidase like 10 [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr2:115525898-115689739:+
Coord C1 exon
chr2:115525898-115525972
Coord A exon
chr2:115579114-115579266
Coord C2 exon
chr2:115689687-115689739
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCCATTTTTTACAGGAG
3' ss Score
10.35
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GTAACCTTCAAAGCATCAAGACATTCAGTTTCACCAGATTTAAAATATGTCCTTCTGGCATATGATGTCAAACAG
Seq A exon
GAGAGCAATGGAGACAGAGTTGCTTATCCAAGGGCAGTCTAGCAAGTGGCAGAGCTGGGGCATGAGTCCAGGCAGTTTTGTTCCAGAGTCCGTGCTCTTGGTCACCTTACTTTGATGCGTATCCTCCACCAGCACACTTTGAGAAACACCACA
Seq C2 exon
ATTTTTCATTATTCGTATACTGCTTCATATGTGATTTACAACATACACACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175497_MULTIEX1-3/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(10.8=56.0)
A:
NA
C2:
PF0093016=DPPIV_N=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCAAAGCATCAAGACATTCA
R:
TGTTGTAAATCACATATGAAGCAGT
Band lengths:
115-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development