HsaEX6015209 @ hg38
Exon Skipping
Gene
ENSG00000175497 | DPP10
Description
dipeptidyl peptidase like 10 [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr2:115499510-115689739:+
Coord C1 exon
chr2:115499510-115499604
Coord A exon
chr2:115525898-115525972
Coord C2 exon
chr2:115689687-115689739
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTCTTTTTCTAGGTA
3' ss Score
12.42
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATACAGATGTGGTGTATAAAAGCGAGAATGGACATGTCATTAAACTGAATATAGAAACAAATGCTACCACATTATTATTGGAAAACACAACTTTT
Seq A exon
GTAACCTTCAAAGCATCAAGACATTCAGTTTCACCAGATTTAAAATATGTCCTTCTGGCATATGATGTCAAACAG
Seq C2 exon
ATTTTTCATTATTCGTATACTGCTTCATATGTGATTTACAACATACACACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175497-'34-68,'34-65,36-68
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0093016=DPPIV_N=PU(10.8=56.0)
C2:
PF0093016=DPPIV_N=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGTGGTGTATAAAAGCGAGA
R:
TGTTGTAAATCACATATGAAGCAGT
Band lengths:
136-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains