GgaEX6043044 @ galGal4
Exon Skipping
Gene
ENSGALG00000012156 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr7:28739197-28775795:-
Coord C1 exon
chr7:28775701-28775795
Coord A exon
chr7:28766498-28766572
Coord C2 exon
chr7:28739197-28739249
Length
75 bp
Sequences
Splice sites
3' ss Seq
TATTGTTACTTCATTTGTAGGTA
3' ss Score
8.31
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATACAGCAGTGGTGTATAAAGATAGGAATGGACATGTTATTGAACTGAATGTAGAAACAAATACAACTACATTATTATTGGAAAACACAACTTTT
Seq A exon
GTAACTTTCAAAGCATCGAGGTACTCAGTTTCACCAGACTTAAGATTTGTTCTTCTTGCATACGACGTAAAACAG
Seq C2 exon
GTTTTTCATTATTCTTATACGGCTTCATACGTGATTTACAACATACACACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156-'6-7,'6-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0093016=DPPIV_N=PU(3.8=56.0)
C2:
PF0093016=DPPIV_N=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAGTGGTGTATAAAGATAGGA
R:
CGTGTGTGTATGTTGTAAATCACGT
Band lengths:
146-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]