GgaEX6043044 @ galGal3
Exon Skipping
Gene
ENSGALG00000012156 | DPP10
Description
NA
Coordinates
chr7:30838643-30875457:-
Coord C1 exon
chr7:30875363-30875457
Coord A exon
chr7:30866160-30866234
Coord C2 exon
chr7:30838643-30838695
Length
75 bp
Sequences
Splice sites
3' ss Seq
TATTGTTACTTCATTTGTAGGTA
3' ss Score
8.31
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATACAGCAGTGGTGTATAAAGATAGGAATGGACATGTTATTGAACTGAATGTAGAAACAAATACAACTACATTATTATTGGAAAACACAACTTTT
Seq A exon
GTAACTTTCAAAGCATCGAGGTACTCAGTTTCACCAGACTTAAGATTTGTTCTTCTTGCATACGACGTAAAACAG
Seq C2 exon
GTTTTTCATTATTCTTATACGGCTTCATACGTGATTTACAACATACACACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156-'3-7,'3-4,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0093016=DPPIV_N=PU(3.8=56.0)
C2:
PF0093016=DPPIV_N=PU(6.4=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAGTGGTGTATAAAGATAGGA
R:
CGTGTGTGTATGTTGTAAATCACGT
Band lengths:
146-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]