MmuEX6026985 @ mm9
Exon Skipping
Gene
ENSMUSG00000036815 | Dpp10
Description
dipeptidylpeptidase 10 [Source:MGI Symbol;Acc:MGI:2442409]
Coordinates
chr1:125382650-125582892:-
Coord C1 exon
chr1:125582798-125582892
Coord A exon
chr1:125546865-125546939
Coord C2 exon
chr1:125382650-125382702
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTGGTTCTTCTAGGTA
3' ss Score
11.76
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATACAGTCGTGGTATATAAAACCAACAATGGACACGTCATGAAACTGAATACAGAATCAAATGCTTCCACATTGTTATTGGACAACTCAACTTTT
Seq A exon
GTAACGTTTAAAGCCTCCAGACACTCACTTTCCCCAGATTTAAAGTATGTTCTCCTGGCATACGACGTTAAGCAG
Seq C2 exon
ATTTTTCATTACTCATTTACCGCTTCATATTTGATTTACAACATACACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036815-'5-8,'5-5,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0093016=DPPIV_N=PU(3.8=56.0)
C2:
PF0093016=DPPIV_N=FE(4.4=100),PF083336=DUF1725=PD(11.1=11.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCGTGGTATATAAAACCAACA
R:
TGTTGTAAATCAAATATGAAGCGGT
Band lengths:
136-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: