MmuEX6026985 @ mm10
Exon Skipping
Gene
ENSMUSG00000036815 | Dpp10
Description
dipeptidylpeptidase 10 [Source:MGI Symbol;Acc:MGI:2442409]
Coordinates
chr1:123486073-123686315:-
Coord C1 exon
chr1:123686221-123686315
Coord A exon
chr1:123650288-123650362
Coord C2 exon
chr1:123486073-123486125
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTGGTTCTTCTAGGTA
3' ss Score
11.76
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATACAGTCGTGGTATATAAAACCAACAATGGACACGTCATGAAACTGAATACAGAATCAAATGCTTCCACATTGTTATTGGACAACTCAACTTTT
Seq A exon
GTAACGTTTAAAGCCTCCAGACACTCACTTTCCCCAGATTTAAAGTATGTTCTCCTGGCATACGACGTTAAGCAG
Seq C2 exon
ATTTTTCATTACTCATTTACCGCTTCATATTTGATTTACAACATACACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036815-'10-22,'10-18,11-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0093016=DPPIV_N=PU(3.8=56.0)
C2:
PF0093016=DPPIV_N=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCGTGGTATATAAAACCAACA
R:
TGTTGTAAATCAAATATGAAGCGGT
Band lengths:
136-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types