HsaEX6015209 @ hg19
Exon Skipping
Gene
ENSG00000175497 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:20823]
Coordinates
chr2:116257086-116447315:+
Coord C1 exon
chr2:116257086-116257180
Coord A exon
chr2:116283474-116283548
Coord C2 exon
chr2:116447263-116447315
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTCTTTTTCTAGGTA
3' ss Score
12.42
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATACAGATGTGGTGTATAAAAGCGAGAATGGACATGTCATTAAACTGAATATAGAAACAAATGCTACCACATTATTATTGGAAAACACAACTTTT
Seq A exon
GTAACCTTCAAAGCATCAAGACATTCAGTTTCACCAGATTTAAAATATGTCCTTCTGGCATATGATGTCAAACAG
Seq C2 exon
ATTTTTCATTATTCGTATACTGCTTCATATGTGATTTACAACATACACACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175497-'15-20,'15-18,16-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0308811=Str_synth=FE(53.4=100)
A:
PF0308811=Str_synth=FE(41.4=100)
C2:
PF0093016=DPPIV_N=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGTGGTGTATAAAAGCGAGA
R:
TGTTGTAAATCACATATGAAGCAGT
Band lengths:
136-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)