HsaEX0021860 @ hg38
Exon Skipping
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone lysine methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24650]
Coordinates
chr9:137618963-137711030:+
Coord C1 exon
chr9:137618963-137619049
Coord A exon
chr9:137646336-137646438
Coord C2 exon
chr9:137710967-137711030
Length
103 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTTTCTGTGGGACAGTGG
3' ss Score
6.46
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GGGCCGCGAGGCGCGGGCGGGGCGATGGCGCGCGGGAGGGGCGGGGCCACGCTGCGGGCCCGGGCCATGGCCGCCGCCGATGCCGAG
Seq A exon
TGGTACCTGGCCTGAGGAACATTTCAAGTTTGTGCTGCGGGCAAGAATCCTGTGACCACGGGGAGAGGACGAGGGACTCATTCTCTGGACAATGGGCTGGAAA
Seq C2 exon
GCAGTTCCGGCGAGGGGGGAGCCTCAGCAGGATTGCTGTGTGAAAACCGAGCTGCTGGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090_MULTIEX1-4/38=C1-6
Average complexity
C2
Mappability confidence:
98%=100=98%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.000 C2=0.995
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000460843fB2298
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development