Special

HsaEX0023061 @ hg19

Exon Skipping

Gene
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:30541]
Coordinates
chr16:20802172-20810673:-
Coord C1 exon
chr16:20810585-20810673
Coord A exon
chr16:20803880-20804026
Coord C2 exon
chr16:20802172-20802254
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATTCTCCTTCACTACACCAGGGA
3' ss Score
5.79
5' ss Seq
CTAGTACGT
5' ss Score
6.23
Exon sequences
Seq C1 exon
GGTTGGACGATTCTCGGAATACTGCCCTTCTTGCTTGGAAAATGATCAGAGATGGTTGTGTAATGAAAATTACAAGGTCGTTGAACAAG
Seq A exon
GGACCTCGTTGGTTTCCAGACCTTCTGGGTAACAATTTGATCCCATCCAGCTGACTTCTGTCACCCCATCCTGACGTGAGCCTGGGTTACTGGCATTCACACCATCTTTGCCCTAGTCCACCACGGAAGGAATTCAAATTCTTTCTA
Seq C2 exon
GGTCCCTTCCTCTTGCCTTCGTGGACCTGGAACAGTGATCTGGCCTCAGGGGACCAGCATGCTTTTCTTCAGCAAGAATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-'10-13,'10-12,13-13
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0092919=RNase_T=PD(5.8=36.7)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTCTCGGAATACTGCCCT
R:
TGCTGAAGAAAAGCATGCTGG
Band lengths:
156-303
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development