HsaINT0057799 @ hg19
Intron Retention
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:30541]
Coordinates
chr16:20807662-20810673:-
Coord C1 exon
chr16:20810585-20810673
Coord A exon
chr16:20810390-20810584
Coord C2 exon
chr16:20807662-20810389
Length
195 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
ATTTGTCTGTGGAATCATAGGTT
3' ss Score
4.63
Exon sequences
Seq C1 exon
GGTTGGACGATTCTCGGAATACTGCCCTTCTTGCTTGGAAAATGATCAGAGATGGTTGTGTAATGAAAATTACAAGGTCGTTGAACAAG
Seq A exon
GTTAGTAGTGTCTTGCCTTTTTATTCTGTCATCTCAAACTTCATAAACAGTCATACGTTCTTTGAAACGTAGATTTAATGTGTGCAGTCATTTATAAATCAATGACATTTCTCTTTTTTGTCATAAAACTGTATACTGAAGAAATTAACGAATGCACAGTTTCTAAAGCTGTTGCATTTGTCTGTGGAATCATAG
Seq C2 exon
GTTCCCACTAAGAAGAATTTCAGCATTCTGGCCAGAAATTTGAATACAATTCAAGTTGAAGAAATGTCTGCCTGTAACATTAGCATCCAGGGTCCCAGCATATATAATAAGGAGCCTAAAAATATAATAAATCCTCATGAAAAAGTTCAAATGAAGTCAATTTGTGCAAATTCTCCTATAAAGGCACAACAGGATCAATTACAAGTAAAAAACAATATAAAAGCAAGTCTTCACAATGTCAAAAGTTCCTTACCTCTTTTTAATACTAAGTCCTCTACTTCTGTGGGGCAGTTGCAGTCTCCTACCTTGAATTCACCTATCTATATGCAAAAGCAAGGAAAAAATGAACATCTTGCATTTAATACCAAATCTAAGGCTTCAACAGTTGGTTCAGAATTGGTACTTGTTTCTACCACCGTTCCAACTGTTCATCATGTTTCTGATTTGGAAATGAGCTCTACTCTGGACTGTTTACCTGTGTTGGCTGATTGGGAGGATGTGGTTTTACTGCCAGCATCTCAGCCTGAGGAAAACGTAGACTGTACAGTTCCCATTAGTGACTCAGACTTAGAGATTTCATTTAATTCTGGAGAAAGATTAATGGTTTTGAAAGAATTGGAAATGTCAAGTCATGAAAACTTTGGAGACATAGAGGAAACTCCTCAAAAATCTGAGACTTCTAAGTCTATTGTGTACAAGAGTCCTCACACTACTATTTATAATGTAAAAGAAGCCAAAGATCCAGGTTCAGATATTTCTGCCTTTAAGTTACCTGAACACAAATCAAGTACCTTCAACAGAGTTAATGCCAATATGTCTCATCCTTTAGTTTTGGGGAAACATCCTCTTCTTTCAGGTGGTACCAAAAGGAATCCATGCAGTCCCCAAGCTTTCCCACCAGCAAAAAAACAACCCTTCACTATTCATGAAGAAAAGCCTACATCATCTGATTGCTCCCCAGTAAGAAGTTCTTCCTGGAGGCGTCTCCCATCTATATTAACTTCTACAGTTAACCTACAAGAGCCATGGAAGAGTGGGAAAATGACACCTCCATTATGCAAGTGTGGTCGGAGATCTAAGAGACTTGTTGTTTCTAATAATGGACCGAACCATGGAAAAGTCTTCTATTGTTGCCCTATCGGGAAATACCAAGAAAACAGAAAATGTTGTGGTTATTTCAAATGGGAACAAACACTTCAAAAGGAAAGAGCCAACAGCATGGTTCCATCTCATTCCACAGGGGGACTCACTTTTAGTTCTCCAGAAACAAGCCATATTTGTGACAGAAATTTAAGTATTTCCACCAAAAATTCTTTGAGACTCAGGCCTTCAATGAGGAATTGATAACCTTTCATGTATGAATCCTAATTGTTCCTTGAATTTCCAAACATGAGTATTCTGATAACATCTTACACTATTTTATTTTTATTTTATATATTAATGTTTACTGCATTTACCATACTTTCTTCAGGAACCACAAGTGTAATCTTTTGTAAACAGTATTTATTAGATTACATATAATAAGCAACAATAGTATATGATCCTTCTTTTATAGTTAGACCTTGAAACAAGTCTAAACTATTTTTAAATTATTTGCAAAAAATGTGACTAATAAAAATCCCTAGTCTATTTTCAGGTAGATTCTTGTACTTTGAGATTATCATAATCTTCTAACTGATATTTTATATTTTTCTAAAAACTTTTATAAGTTCTTTAGTTTTATTTCAGGCTTGAACATTGGTTCTGATTTGTATATCAACATATCAGAAGAATTAGTCAACTAAAGTTTGAAAACCTATGTAGCAGAGATCTGGTTCAGAAACTGCTTCTATACTATACATTTAAAAATTAATCAGCAATTGATGGTATTATTTTTATATTAAGAAATGATAGGAACATTGACACTAATGTGGAGGAATTTGCCAAATATTTTATTTCAAAATTTAGCCTCTGATATCATAACCACAAGATATTTTAAATCAACAGTTTCTAAGCATACTACCACAGTTTTTATGACCTCTCCATCATCTTGTGGTTTCTAGAGATTGACAGATACTATGTTTGTTTTATAGATATGGTAATTAATGAAACAACTTTAAATTGTCTTCCATTCTTTCTTCCTCAGTTCATTTCTTTTTGTCTTCCCACTGATAGTCTTTGGCAGCTCTTGAATAAATTCTACCTGTTGGCATCAAGGGGAAGAAAATTAGCCTGGAAATTTTTATCTTTACATAAAGCCAATTATATAGCAGTTTGATTATGAATTCTAGGTGGAAGAATTAGAATAGTCTTTGGAATGGGTTTTGGGTAACAGCCAAAATAGGGAAAAGGGTATTGTTAGGAAAGTTGTCTTGATATTAAGTATTTACTGTGAGTCCAGTAAGCCAAAGGACCAAACAAAATAGGTTCAGGGTTTCATTTTAATCTCAAAGATTCTGATTCTTACCCATATGTCATCAGTTCAGTTTGGGACATGTGGTGCAGCATGTGTGAAGAAAATATTCATTAAAATGTAAAAATAAACACTTGAAATTGTCCACAACACTGAGCAAATATTCGTTATAATTAGGATGCCTACCTTTCTGGGATATTTGTAAGGTGCTGTAGTTTTTTTAACATGCTCCTGAATCTCCTTTATTAGTTGTTCTTGATCATGTGACTTGTAATCAGGATTTAGAACGACAAAAGCCTTTACTACCTAAAATAAATATTTGAAACACCAGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-ERI2:NM_001142725:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.302
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PD(5.8=36.7)
A:
NA
C2:
PF068397=zf-GRF=WD(100=10.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCCTTCTTGCTTGGAAA
R:
GTGCCTTTATAGGAGAATTTGCACA
Band lengths:
256-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)