RnoINT0056311 @ rn6
Intron Retention
Gene
ENSRNOG00000014673 | Eri2
Description
ERI1 exoribonuclease family member 2 [Source:RGD Symbol;Acc:1583889]
Coordinates
chr1:189540145-189543108:-
Coord C1 exon
chr1:189543020-189543108
Coord A exon
chr1:189542864-189543019
Coord C2 exon
chr1:189540145-189542863
Length
156 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
ATTTGTCTATGGAATCATAGGTT
3' ss Score
4.05
Exon sequences
Seq C1 exon
GCTTAGATGATTCTCGGAACACTGCTCTTCTTGCTTGGAAAATGATCAGGGATGGTTGCCTAATGAAAATTACCAGGTCCTTGAACAAG
Seq A exon
GTTAGTGGTGTCTTGTCGCTTTCTTCTGTCATTTTGAGTCCTCGAGTAGTCACTTATGCACCAATGACATTTTTCCTTTTTTTGTCATATATAATGTCTATGGAAGAAATTATAAATACAGTTCCTAAAGCAATGGATTTGTCTATGGAATCATAG
Seq C2 exon
GTTCTCACTAAGAAGAATCCCAAGATTTTGGCCAGAAATTTGGGTTTAGATCAAGTTGAAGAAGCATCTGCCTGCAACATTAGCATCCAGGATCCCAGCATAAACCAAAAGGAGCTCCAAAGTACAGGAAATCCCCAGGAAAATGCTCAAATGAATTCAGTTTGTGTGAATTCCTGTATAAAGGACCAATTACAACTAAAAAGCAACATGAAAGCAGATCTTTACAATATCAAACATAGCTTTCCTCTTTTCACTACCAGGTGCTCGACATCTGTGCAACAACTGTGTGCTCCCACCTTGAATCCAGCTCTCTATATACAGAAGCCAAGTAAAAGTGAGCAGCTTGCATCAAGTGACCGCTCAAAGTCCTCAGCACTTGACTCCAACTTGGTGCTTGTGTCTACAACCATCCCGTCTGTTAACCTTGTTTCTGATGTAGAAATGGGTCATACTTTTGACTGTTTACCGATGTTGGCTGAGTGGGAAGATGTAGTTTTACTGCCAGCATCTCAGGCTGAGCCAGACACAGACTGTATGCCTCCTATTAGTGACACAAATGTGGATACTTCATTTAATTCTGCAGAGAGGTCACTGGTTTCAGAACAACCAGAAACACTTAGTTATGAAAACTTTGACGACCTTAAGGAAACTCCTCAAAATTCTGAGACATCTAAGTCTATTGTGTATAAGAGTCCTCACAGTACAGTCTATAATGTAAAGGGAGCCAAACACCCAGGTTCAGATGCCTCTGCGTTTAAGTTACCCGAATGCAAACCATTTCCTTTCACCAGTGTTCATGCCAATGCATCATCACATCCTTCAGTTTTGAGGAAACAACCTCTTCTTTCAGGTGGCACTAAAAGAAATTCATTTAGTCCTCCAGTGTTTCCACGAGCCAAAAAGCAGACCTTTGCTATTCATGAGGAAAAGTCAACGTCATCTCTCTGCTCCCCAGGAACAACTTCTTGTAAAGTTCCTCCCTCTGTGTTAACATCCACAGTTAATCTACAAGAGCCTTGGAAGACTGGAAAGATGACCCCCCCTTTATGCAAGTGTGGCAGAAGATCTAAGCGGCTTATTGTTTCTAATAATGGGCCAAACCATGGGAAAGCCTTCTATTGTTGCCCTGTTGGGAAATACCAAGAAGACAAAAAAAGCTGTAGTTATTTTAAATGGGAACAAACACTTCAGAAGGAAAGAACCAATGGCAAAACTCTACCTCATTCCTCAGGACTCACTTTCAGCTCTCCAGACACAAGCCACATTCGTGACAGAAGTTTAAATTTTCCTACTAAAAATTCTTTACGACTCAGACCTTCAATGAGAAATTGATAAACTCTTCTAAGCTGTCTTTTACTTCAGTATAAGCTTTATCTGACGTTCACACAGGAAAAATAGCAATAGGCTTTACATTATGTAGTCTCAGCATATCTGAGCACTGCAGCTACTCTGGAGCGGCTCAAACGAACAGAAGGGAAATGGATGCACTCTTGCCAAGTAGTTGTCTGTCAACTATGGTCTGTTCATGTGGCGATCCTTGTTCCTAGATGAGCATTTGGGTAGTCATATATTTCATACATTAACATTTGCTGAATTTATCAAACTATCCTAAAGAACTACAAGGAAAAACTATTTTTATAAACCATATTTATTAGGTTAAATTTAATAACTAACCATAGAATATGACAGCTGTCTCTTATACTTTGACATTGAAACAAATTTCAAACTATTTTTAAATTACTTGAATAAAATTATGACTAGTAAAATTCCTACTCAACTTTTAGGTAAGTATTCTAAGAATTATGACAGTTTCCTTCAAAGCTTGAAGATTTGTTCTGATTTGTATATTGGCATATTAGAATTGTTCAGTTAAGTTTTGAAAACCCATGGGGCAGAGATTTGGTTTAGAAACAGCTCCTAAAATAAATTTTAAGGCATCACGGCATCTGATAACATTCATTTTATGTTGCAAATTACAGGAACATTGACATGAAGGCAGAAGGATTCAGTGATTATATGATTTCATAATTCAGCCTATGGTTTCATTCTACAAAATAGTTTAAATCCAATTTAAAAGCAGTCTGCCCACGTGATCTGTGGTTCCTGTAGACTCAGAGACACTGTGTTTACTTGTAGATATGCAGGTGATTAGTGGGCCAAGTTTAAGTTGTTGTCCATTCCTTTCTCCTCAGTTCATTTCTTTTGACCTTCCCACTGACAGTCTTTGGCAGCTCCTCAATAAATTCTATCTGTTGGTATTAAGGGGAGGAAGAAATTAGTCCATCACTTGTAGACTTCATTCAGGTCATGCCAGTTACCCAATATCTCTGTTTCAAATTCTAGGTAAAAGGATGAAGTTGGGTTTTTGTTTGTTTGTTTGTTTGTTTTGTTACATTAATATTATGAGCTAATTGACTGAATTATGTTAGGGGCGTCACTTTAACCTCAGAATTTTTTGATTAACTATTGTCATTAGCTCTGTTTGGAACCTTTTGCACAGCATATTTAAGGAGAAAGATCATTTAAAAGGAAAAAAACAAATAGAAAAATTTCCAAAACACTAAACAAGTAGCAGTTGTAACAAGGACACCTACCTTCCTGGGGTATTTGTAAGGTGCTGTAGTCTTTTTCACATGCTCCTGAATCTCTTTTTTCAGTTGTTCTTGATCATGGAGTTTGTAATCAGGATTTAGGACAATAAAGGCCTTTACTACCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014673:ENSRNOT00000019747:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.357
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PD(5.8=36.7)
A:
NA
C2:
PF068397=zf-GRF=WD(100=11.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAACACTGCTCTTCTTGCT
R:
TCACACAAACTGAATTCATTTGAGCA
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]