RnoALTA0014125-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000014673 | Eri2
Description
ERI1 exoribonuclease family member 2 [Source:RGD Symbol;Acc:1583889]
Coordinates
chr1:189542503-189543108:-
Coord C1 exon
chr1:189543020-189543108
Coord A exon
chr1:189542604-189542863
Coord C2 exon
chr1:189542503-189542603
Length
260 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
ATTTGTCTATGGAATCATAGGTT
3' ss Score
4.05
Exon sequences
Seq C1 exon
GCTTAGATGATTCTCGGAACACTGCTCTTCTTGCTTGGAAAATGATCAGGGATGGTTGCCTAATGAAAATTACCAGGTCCTTGAACAAG
Seq A exon
GTTCTCACTAAGAAGAATCCCAAGATTTTGGCCAGAAATTTGGGTTTAGATCAAGTTGAAGAAGCATCTGCCTGCAACATTAGCATCCAGGATCCCAGCATAAACCAAAAGGAGCTCCAAAGTACAGGAAATCCCCAGGAAAATGCTCAAATGAATTCAGTTTGTGTGAATTCCTGTATAAAGGACCAATTACAACTAAAAAGCAACATGAAAGCAGATCTTTACAATATCAAACATAGCTTTCCTCTTTTCACTACCAG
Seq C2 exon
GTGCTCGACATCTGTGCAACAACTGTGTGCTCCCACCTTGAATCCAGCTCTCTATATACAGAAGCCAAGTAAAAGTGAGCAGCTTGCATCAAGTGACCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014673-13-13,13-12,13-11-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.357
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PD(5.8=36.7)
A:
NA
C2:
PF068397=zf-GRF=WD(100=11.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGATGATTCTCGGAACACTGCT
R:
AGCGGTCACTTGATGCAAGC
Band lengths:
188-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]