Special

MmuINT0058885 @ mm9

Intron Retention

Gene
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:126927340-126930341:-
Coord C1 exon
chr7:126930253-126930341
Coord A exon
chr7:126930059-126930252
Coord C2 exon
chr7:126927340-126930058
Length
194 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
ATTTGTCTGTGGAATCATAGGTT
3' ss Score
4.63
Exon sequences
Seq C1 exon
GCTTAGATGATTCTCGGAACACTGCTCTTCTTGCTTGGAAAATGATCAGGGATGGTTGCTTAATGAAAATTACCAGGTCCTTGAACAAG
Seq A exon
GTTAGTGGTGTCTTGTCACTTTATTCTGTCATTTTGCGTCCTCGGGTAGTAGTCATGTTCATTAAAATGTTGATTTCATGTGTGTAGTCATTTATGCACCAATGACATTTTTCCTTTTCTTGTCATATATAATGTCTACACAAGAAATTATAAATACGGTTCCTAAAGCAATGGATTTGTCTGTGGAATCATAG
Seq C2 exon
GTTCTCACTAAGAAGAATCCCAAGATTTTGGCCAGAAATTTGGGTACAGATCAAGTTGAAGAAGCAGCTACTTGCAACATGAGTATCCAGGGCCCCAGCATATATCAAAAGGAGCTCCAAAGTACAGTAAATGCAGAGGAAAATGCCCAGATGAATTCAGTCTGTGTGAATTCCTCCTGTATAAAGGGCCAATTGCAACCAAAAAGCAACATGAAAGCAGATCTTTACAATATCAGACATAGCTTTCCTCTTTTCACTACCAAGTCGTCGACATCTGTGGACCAACTGCATTCTCCCACCTTGAATCCACCTCTCACTATGCAAAAGCCAAGTAAAAGTGATCAGCTTGCACTGAATGACAGCTCAAAGTCCTCAACACTTAACTCCAACTTAGTGCTTGTATCTACAACCATTCCGTCAGTTAATCATGTTTCTGATGTAGAAATGGGTCATACTTTTGACTGTTTACCGATGTTGGCTGAGTGGGAAGATGTAGTTTTACTGCCAGCATCTCAGGCTGAGCCAGACACAGACTGTATGCCTCCTGTTAGTGACACAAATGTCAGTACTTCACTTAATTCTGCAGAGAGATCACTTGTTCCAGAAGAACCAGAAACCCTTAGTTATGAAAACTTTGAAGACCTTCAGGAAACTCCTCAAAACTCTGAGACATCTAAGTCTATTGTGTATAAGAGTCCTCACAGTACAGTCTATGATGTAAAAGGAGCCAAACACCCAGGTTCGGATGCCTCTGCTTTTAAGTTACCCAAATGCAAACCATTTCCTTTCACCAGTGTTCATGCCAGTGCAGCATATCCTTCAGTTCTGAGGAAAGATCCTCTCCTTTCAGGTGGCACTAAAAGGAATTCACTTAGTCCTCCAGCTTCCCCGAGAACCAAAAGGCAGACCTTCACTATTCATGAAGAAAAGCCTACATCATCTATTTGCTCCCCAGGAACAACTTCTTGTAGAGTTTCTCCCTCTGTACTAACATCTACAGTTAATCTACAGGAGCCTTGGAAGACTGGAAAGATGACACCGCCTCTATGCAAGTGTGGCAGAAGATCTAAGCGGCTTATTGTTTCTAATAATGGGCCAAACCACGGGAAAGCCTTCTATTGTTGCCCAGTTGGGAAATACCAACAAGACAGAAAATGCTGTGGTTATTTTAAATGGGAACAAACACTTCAAAAAGAAAGGACCAATGGCAAAGCTCTGTCTCATTCCTCAGAAGGGCTCACTTTCAGCTCTCCAGAAACAAGCCGTATTCATGACAGAAATTTAAGTTTTCCTATTAAGAATTCTTTACGACTCAGACCTTCAATGAGACATTGATAAAACTCTCTTCTAAACTGCCTTCAGTGTATGTCTTATCTGACTTTATGCAGGAAAGATAGCAGTGGGGTTTACCTTACGCAGCCTCAGCATATCTGAGCACTGCAGCTACACCGGAGCAGTTCATACAAACAGAAGGGACATGTCTTTCATGGCGTGCACTCTTGCCAAGTAGTCTATCAACTGTCATCTGTTCATGAAGCAATCCTTGTTCCTAGATTTCCAAGTATGAACATTTAGATAATGTCATATATTTCATATGTTAACATTTGCTGAATTTATCAAACTATCATAAAGAACTACAAGGAAAAACTATTTTTACAAACCATGTTTATTAGGTTAAATTTAATAACTAGCCACAGAATGTGACAGCTTTCTCTTATACTTTGACCTTCAAACAAATTTCAAACTATTTTTAAATTACTTGAATAAAAATATGACTAGTAAAGTTTTAGGTAAATATTCTAAGAATTATGACAGTTTCTTAAAAATAGGGTTCTTTTCAAAGTTTGAAGATTTGTTCTGATTTGTATATTAGCATATTAGAATTGTTCAGTTATGTTTTGAAAATGCCTGGGTACAGATTTAGTTTAGAATCTGCTCCTAAAATAAATTTTAAGACATCTCAGCATCTGGCGACATTCATTTTATGTTGGCAGATTACAGGAGCATTGACATGAATGCAGAAGGATTCAATAATGATTATTTGATTTCAGAATTCAGGCTCTGATGTCATAACTACAAAATACTTTCAATCCAGTTTCAAAGCAGTCTGCCCACATAATCTGTGGTTCCTGCAGACTTGTAGACACTGTGTTTATAGCTACACAGGTGATTAGTGGGAGGAGTTCAAGTTGTTACCCATTCCTTTTTCCTCAGTTCATTTCTTTTGACCTTCCCACTGACAGTCTTCGGCAGCTCTTCAATAAATTCTACCTGTTGGTAGTAAGGGCAGGAAGAGGTTAGTCCAGCACTTGTTCACTTCCTTCAGGTCATGCCGGTTACTCAAGAGCTCTGTTTCAAACTCTAGGTGAAAGGATAAAGTTAGGTTTTGTTCTTTTTGTTTTTTACATTAAAATTATGAGCTAATTGACTGAATTATGTTGGGGGCTTCGGTTTAGCCTCGGAGTTTTTGATTAACTATTGTCATTAGCTCTGTTTGAAACCTCTCGCATAGTATATCTGAGGAGAAAACTGTCCAAAGCACTGGACTGACATCACTGGTACCAGGGACGCCTACCTTTCTGGGGTATTTGTAAGGCGCTGTAGTCTTCTTCACGTGCTCCTGGATCTCCTTTTTCAGTTGCTCTTGATCATGGGACTTGTAATCAGGATTCAGGACAATAAAAGCCTTTACTACCTAAAGAAGACATGTAGAACATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929-Eri2:NM_027698:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.397
Domain overlap (PFAM):

C1:
PF0092919=RNase_T=PD(5.8=36.7)
A:
NA
C2:
PF068397=zf-GRF=WD(100=11.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAACACTGCTCTTCTTGCT
R:
ACACAGACTGAATTCATCTGGGC
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development