GgaINT1012449 @ galGal4
Intron Retention
Gene
ENSGALG00000026038 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr14:14919945-14924439:-
Coord C1 exon
chr14:14924351-14924439
Coord A exon
chr14:14924165-14924350
Coord C2 exon
chr14:14919945-14924164
Length
186 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
TTTGTTAATGGACTCCCTAGTCC
3' ss Score
3.63
Exon sequences
Seq C1 exon
GGTTGGATGACTCTCGGAATACTGCTCGTCTTGCTTGGAGGCTGATTTGTGATGGGTGTGTGCTGAAGATTACTAAATCTTTGGATAAG
Seq A exon
GTTGGTTACTATTTCATATCTTTCCTCTGCTAGTCTTATCGTCTGAAATACAGGTGAAGGGTGAATCTTGAGTATGAACTGAACAGAATATCCTTAGGCTGATACACTTGTTAATTTTGTGCAGTGATTCTTAAAGTTTCTGGGTATTCACTTTCCAAAATCTCTTTTTGTTAATGGACTCCCTAG
Seq C2 exon
TCCTATCCTAGGAAGAACTTGATTTCCAGAACGCTGAATACCAACTCTGCTGACAAGACTCTGCCAGGAAGTAGCAGCAGCCTTGAAACATCCAGAGACAGAACTTGCAAAGCAAACTCTCTGACAGAGAGAAGCCACAATGGTACTGTTGGAATTGTGGTAAATTCTGATGTACAACCTGCAGGACAGGCCACTTGCAGTGATTGCTCTACAGACATGCATGTTGTATCCGGCAGCAGCTCAAGGACTGATCTGTGTGAAGAAACCCGAAGCTCTTCCACAGTATCTGCTGACAGATTTCCTCTTCTGGGATGTGCACAGCAATCTCACAGTACTTTATCACCAGGCATTCAGCAAGGATTGAACAGTGGGCATCTCATGAGCACAGGAAGGTACAGCTCTCCAGTGTGTGGGTCTGGACTAGTACTCATCTCCACCACCATCTCCTCAGTTAATACCTCCAGTGAGGATACAGGCACTCGTTCTGATTGCTTGTCTCTGCTGACTGACTGGGAAGATGTAGCTCTAATACCTAAATCTCAATCTGAACCAAATCCAGACTACATTCAATCTAAGGAGGACTCAAGTACAGACATCTTAACTGTGTCTGAAGAAAATACAGTTCCAAAGCAATCGGCTGCGGTGAGTTCAGGTGATCAAAGTTTGGGGAAAACTCTGGTACCCATAGAACCTCCTAGATCTATCATTTACAAAAGTCCTGATACTACTATCTATAATGTAGGAATGGTACAAAAGCAGACTTCAAATATTTCTGCTTTTAAGATTCCATCTGCAAAGGTAAATGCTATTTCATCCCGATCAGTATTAATGAGAAATTCTTCTATTCCTTCTGAGGTTCTCAAAAGAAAGCCAACTGGTCCAATAGCACTCCCACCAGCAAAAAAACAGGCTTTTGCTATCTATCAGGAGACAATGGTGTCTTCAGATCATGCCTTACCTTTGAATTTGTCCAAAGCATCTCGTGCCGTTCTGAGCTCCACAGTCAATCCGAATCAGTCTGTAACAGCTGTGCAAAATGAAAAACTAACTCCCCCTCTGTGTAACTGTGGTCAAAGGGCTAAAAGGCGCTACGTGTCAAATGCAGGTCCAAATCATGGCAAGGCTTTTTTCTGTTGTCCTGTTGGCAGGCATGAAGGTAGTAAGAGAAGTTGTGGATACTTCAAGTGGGAAAATGCATTTCTAAAAGAGAAATCTCGTGTTATCACCATGAATCTAGATGCTTTGACCTCTCTTGGAACGTGCCCCAGCACTTCAGGAAATTCTTCCAACAGATGTTTGTTCCTCAGACCATCTATGAGAACTTGAAGCTTTTTAATTTGGTGGTTTGAATCTGAAGCTCAATTCGTTAACTGTAGTTAACAAAACTGGTGCAGTCCAATGATGTCAGATATGTGTTCTGAGCAGAGGATGAAAATAATGCTGCTTGGCTAATGTGGATGAAAATTGCAATTGTTTAAGCATACAGACATATCCACGTTAACATGATTGGAGTGATACAGAACAAATCATTGTGCCTCAGTTAAGGTGTGAGCAGCTGTTGTTACACATCTTAAACTCCTACTTCATCATCACGTCTTAAATTCTTTGGTAATTGAGTCCTTAAACATTTTAATGATGTAGATTTTGCTTTTATACTATTTTTTCTAAACATACTTGTAGAGATTTTTAACTGTAACTTTTAAATATCTATAAGTTGTCATGATGCTCAGAAGTTATTCTTGAAGCAAGCATTGTACTAAACTCTTGTGATTTTTCTCATTTCAGTAATAATAAAGATAAAATGCTAGTGATGGTTCATTAAGTTTATTTAACACATCATCCATTGCACTCTTGATTAGACAACTTTTGTGTCATTCGTATCAGCCTGCCTGCTTTTGTTCCCTCCATGTGGCACCGGGGCAGCCGAGTGCTGGGGGTCAGGTGAGAGTTAGTGAAAATGTCAACTAAGAGAGACATTGTGTGCCTTCACATTACTGTGTAAATCATCATTATCTTTTTTTTATTTAAACAAACAAAGCAAAAAGCCACCACTATGTTAAAGCAACACCCAAAGCATTCTAATATCTCCTCCACTCCTTCTGGCGTAATTCATTTCTTCGGATCTTCCCACTAATGGTTTTTGGCAGCTCTCGAACAAACTCCATCTAATGGGAAAGGGAGGAAATTACAGTACAAAATAATTTACTTCAAATATGACTTCCCCTTGGTGACATAGCCTCACAAGTGACATAATAGTTGTTACGTGCTTTCTTATAGTCATGACAATTACTTAAAGTATTTGGATAATTGCTGACTTACTTTCCGAGGATACTTGTATGGAGCAGTAGCTTTCTTAACGTGATCTTGTAGATCTTTCATCATTTTTTCTGGATCATGTGAGACGTAGTTGGGCGTTAAAACAACAAAGGCTTTCACTACCTTGAAGACAGTAAGGGAGCAGAGGGTGAAGTATGATGGAACATCACACAACAGTCAGATTTGAAAGTTTGGTTAAACTTTTACGTTTACCAAACATTTACGTACAAACTGCAGAATAACAGACACGATGAATGCAAACAGCTATGCCAGTGTTCTGTGTTTGGACTATGGAGATAGTCAACAGGGGAAATACTGGAATGCAGAGAAAAAGCTTCAAATTGTGCTTTGGTTATGTTGGATGGGGGGTAATTGCCATGGTCTGTTTTTCTTGTTTAGACATATCTGATAGAGTAGAAACGCCAATTTGATTTTATTTAGTTCAGAAATTTCATCACTGGGTAGACTAATCCATTGGAAGTTGGTCTTCATCAGCTGCAGTATGCATAAGGCTCATTTTTACCTAAAATGTGCTTAGCTTGTTTACCTCTCCCCTGATGGGGTCTGGACTGCTGACAACAGCTGATTCCAGCACTGCAGGATGCTCTATTAGAGCACTTTCTACTTCAAATGGTCCAATGCGGTATCTTTAAAATGAAGATAAAGGTTATTTATTTGTACTTGAAACACATAAACACATCTTATCTGAATCAGCTCTATTATTGGTGCTGGAAGATGTATTGTTAATCAGTGTTGAATTACCCAGCAGAATTAATGACATCATCAGCTCTTCCAACAAACCAGAAGTATCCATCTTCATCCATGAGCCCCCTGTCTCCAGTAACATAGAAATCCCCACGGACTGTTGCCTTTGTTTTCTCTGGATCATCCTAGAAAATATTAAATTGTGTTTTGCATAAAAGCTACTTGAAAAATAAAATAAATTGCATTCTAGTAGATTCGTATTCAGCAGGAATATTCAGTGGGACATTAATAATAACCAATTGTAATAAATGACAATAGATTATTAATTCACTGTTACAGCCCATAAAGCAAGACATAGTTGATGATTGGACTAGATGGCCTTAGTGGTCTCTTCCAACCTTAATGATTCTATGATAATAGGCTGATAGCATCCATAAAATTTAATATGGTTTCCTGTTGTAAGAACCGAGAGCACTATGCATTTGTTTTTCTGATTCTGGGACTGAAAGTTTGAACCAAAATGGAAACAAAAAGTGCTGTGCTCAAAACGTTTGATGGAGCCCAGTTCTGAAGTGAAGAGACTTGAACAGTGTCCCCCACTTCTCAGATGGGGTTCCTAACCCTCTGACCAAAGGGTATTTGGGGACTCAGGGAGGAGGCTGTTGGAGATTTCTCTTTTTATTAAGGAAATAATCAAAAGAAAATGAATTTAACTTGCTAGGCAAGGTACTATCATCAACCAACTAACAATTTGTGTAAGTAGACTAAGCAGCTGCATGAAAAGAAATGGAAATCTCTTTCCTTCTCAGGAGTATTCAGACATCTAAACAGTATATGTAAATGAAACAAGGCACGGATTCCTTGGCAGAGGCTTAATATGGCATCTGTTTAGCTGGAGAAGCATTCTTACAGTATAGCAAGTAAAGAGGAAAAGTGGTCTTGTAGGTTTTACTTTGATGGCAATCTCTCCTTCTTTTCCAGGAGGCAGAATATTACCGTTTTCATCTATAATCTAAAAATAAGCAAAACACAGCTTTATTATCTTTCAGCCAAATTAAAAAGCATTATGTTAATATTATAGAATCTTGATACTCATTTAAAACATTTCCTCTAAGTATCCATTGGAAAATTATTTGGAGCATTGGAGGTGAGTCTGACCCTGAAATTACAGTGTTAGATTACTGTGAATCCACTTTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026038:ENSGALT00000045747:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.287
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PD(5.9=36.7)
A:
NA
C2:
PF068397=zf-GRF=WD(100=11.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTGCTTGGAGGCTGATT
R:
TGTCCTGCAGGTTGTACATCA
Band lengths:
251-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]