GgaEX0002729 @ galGal4
Exon Skipping
Gene
ENSGALG00000026038 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr14:14919945-14925022:-
Coord C1 exon
chr14:14924941-14925022
Coord A exon
chr14:14924351-14924439
Coord C2 exon
chr14:14919945-14924164
Length
89 bp
Sequences
Splice sites
3' ss Seq
GTATAACCATACTTTTGAAGGGT
3' ss Score
3.57
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GCCTTCTATAATAGAAAACCTAAAGGGCTGAGTGGTGCTTTGCAGTACGTGGGGCTGGCTTTTGTAGGAAGGGAACATTCTG
Seq A exon
GGTTGGATGACTCTCGGAATACTGCTCGTCTTGCTTGGAGGCTGATTTGTGATGGGTGTGTGCTGAAGATTACTAAATCTTTGGATAAG
Seq C2 exon
TCCTATCCTAGGAAGAACTTGATTTCCAGAACGCTGAATACCAACTCTGCTGACAAGACTCTGCCAGGAAGTAGCAGCAGCCTTGAAACATCCAGAGACAGAACTTGCAAAGCAAACTCTCTGACAGAGAGAAGCCACAATGGTACTGTTGGAATTGTGGTAAATTCTGATGTACAACCTGCAGGACAGGCCACTTGCAGTGATTGCTCTACAGACATGCATGTTGTATCCGGCAGCAGCTCAAGGACTGATCTGTGTGAAGAAACCCGAAGCTCTTCCACAGTATCTGCTGACAGATTTCCTCTTCTGGGATGTGCACAGCAATCTCACAGTACTTTATCACCAGGCATTCAGCAAGGATTGAACAGTGGGCATCTCATGAGCACAGGAAGGTACAGCTCTCCAGTGTGTGGGTCTGGACTAGTACTCATCTCCACCACCATCTCCTCAGTTAATACCTCCAGTGAGGATACAGGCACTCGTTCTGATTGCTTGTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026038_MULTIEX1-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.287
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(14.4=100)
A:
PF0092919=RNase_T=PD(5.9=36.7)
C2:
PF068397=zf-GRF=WD(100=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGCTTTTGTAGGAAGGG
R:
TCCAACAGTACCATTGTGGCT
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]